PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0094000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family LBD
Protein Properties Length: 235aa    MW: 24248.8 Da    PI: 8.5045
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0094000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.71.1e-39251251100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq +++f +vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPv+G+v++i++lqqq+ +l+ael
  Spipo1G0094000  25 PCGACKFLRRKCVTGCIFAPYFGSEQgAANFSAVHKVFGASNVSKLLMHIPATKRLDAVVTICYEAQARLRDPVHGCVSHIFALQQQVVSLQAEL 119
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     +ll+++
  Spipo1G0094000 120 SLLRAH 125
                     *99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.3124126IPR004883Lateral organ boundaries, LOB
PfamPF031958.6E-3925123IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSGRGGGALS GGCASGGGTG GGGGPCGACK FLRRKCVTGC IFAPYFGSEQ GAANFSAVHK  60
VFGASNVSKL LMHIPATKRL DAVVTICYEA QARLRDPVHG CVSHIFALQQ QVVSLQAELS  120
LLRAHLATLE LASPPPPPPP PPPPPLPSSP LTIPISELPP ASSLPTSFDL ATLFETPVNL  180
PWPVQQQQQD RQVNRRPFAP AEDPSGGGDL RSLARELVDG QKSAATLPPP AVSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-35191325115LOB family transfactor Ramosa2.1
5ly0_B3e-35191325115LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400358.12e-80PREDICTED: LOB domain-containing protein 18-like
SwissprotO813231e-65LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A444F1133e-82A0A444F113_ENSVE; Uncharacterized protein
STRINGGSMUA_Achr5P11330_0018e-80(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.12e-56LBD family protein
Publications ? help Back to Top
  1. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  2. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]