PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo18G0031500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family LBD
Protein Properties Length: 311aa    MW: 33401.5 Da    PI: 7.3175
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo18G0031500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260964.1e-304106198
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C++lr++C+++C+++p++     +++q++++ +++k++G++ +l+l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++q +q
  Spipo18G0031500   4 SCNGCRILRKGCSESCTIRPCLewikcAESQANATVFLAKFYGRAGLLNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGRWQFCQ 97 
                      6***********************99666889************************************************************** PP

           DUF260  90 lkaelallk 98 
                      +++e++l++
  Spipo18G0031500  98 AAVEAVLRG 106
                      ***998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6243109IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MRVSCNGCRI LRKGCSESCT IRPCLEWIKC AESQANATVF LAKFYGRAGL LNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GRWQFCQAAV EAVLRGGPIM QVPADFDSRS  120
QAAFLQRVSS YDIRHVSKAA AGGTSAFDPK KVNKATRARF KRSGNRVLEV LSEPVADSTG  180
FQWCHPAEYW REPSKDSASG AVEVLLVPAE AAGGESRENE SILSLETVEA STVASQSDVE  240
LELTLGYESV QQHHSPFRGS SSSSSSGSFG RRAEDSPTRA EAASERCPRG AFDGASVGSD  300
RMDLGLDLSA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008799243.12e-91LOB domain-containing protein 41
TrEMBLA0A2H3YIS04e-90A0A2H3YIS0_PHODC; LOB domain-containing protein 41
STRINGXP_008799243.17e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-76LOB domain-containing protein 41