PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo18G0016100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 568aa    MW: 62399.5 Da    PI: 6.7066
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo18G0016100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-13417463455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Spipo18G0016100 417 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 463
                      799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.9E-5250235IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF557815.89E-5151208IPR029016GAF domain-like
PROSITE profilePS5088816.806413462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-19416479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-14416467No hitNo description
Gene3DG3DSA:4.10.280.101.5E-18417481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10417463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16419468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MGIGAGGRGF WSEEDRAMAV AVLGSQAFDF ITAGNMTAEG LTAVGSDSEL QNKLAALVDG  60
PNPTGLTWNY AIFWQISRSK SGEIILGWGD GHCREPREEE DDHLLRHRHR PQHEEEPNQA  120
MRKRVLQKLN TFFGGSDEEN FALRLDRVTD TEMFFLASMY FSFPRGEGAP GRVFASGEPL  180
WVSDCADDYC VRAFLARATG IRTVVLVPSD SGVLELGSVN SLSEDPQAMQ MITSMISHGR  240
QPKPAASSEE CPRIFGKDLN LGRTVPAVAP KLEEPPWDLQ PAGGDRLAPF PNVRKSLHVW  300
NWNQARFGSS DQTNQLSNQQ RNGVNFPQQK QQNAPAAAAA AVAAAVAAAV APPPPPPARQ  360
IDFSGVARLK SLETEKDDAE LPCKEGRPAA AAAAAGEERR PRKRGRKPAN GREEPLNHVE  420
AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAIAYIT DLQKKLKEME SEREMMDQRR  480
RAAECCPEIE VQTVGDEVVV KVSCPLETHP VSKVIHVLKE AQMNVVESKL SAGKDMVFHT  540
FVVKSHGSEQ MVKDRLVAAF SRESHPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-25502379193Transcription factor MYC3
4rqw_B8e-25502379193Transcription factor MYC3
4rs9_A8e-25502379193Transcription factor MYC3
4yz6_A8e-25502379193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1398406RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242399.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242398.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242397.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242396.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242395.10.0PREDICTED: transcription factor bHLH13-like
TrEMBLA0A068UK620.0A0A068UK62_COFCA; Uncharacterized protein
STRINGVIT_15s0046g00320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.32e-88bHLH family protein