PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo16G0039300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family TCP
Protein Properties Length: 179aa    MW: 18814.8 Da    PI: 8.754
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo16G0039300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.11.5e-3458130677
              TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaes 77 
                      ++++++hTkv+gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg++  +a ++ ++ s
  Spipo16G0039300  58 STSKDRHTKVNGRGRRVRMPAMTAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGVAPAAATtTTCS 130
                      578*********************************************************8888844422222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-2959133IPR005333Transcription factor, TCP
PROSITE profilePS5136927.6960114IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MDSQLALYSS SAATTTAAAT GGAAASAAES PAPALFHPQR PRPSTGAGAG RRLSISSSTS  60
KDRHTKVNGR GRRVRMPAMT AARIFQLTRE LGHRSDGETI EWLLRQAEPS IIAATGSGVA  120
PAAATTTTCS DSSPPPGGGA FHRVPYYTSM LMCPPAGDDE QGDQQEPRWA EEQQRRPPE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581062.13e-39PREDICTED: transcription factor PCF1-like
SwissprotO238756e-39PCF1_ORYSJ; Transcription factor PCF1
TrEMBLA0A0E0KN281e-40A0A0E0KN28_ORYPU; Uncharacterized protein
STRINGBRADI5G02880.18e-39(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141722627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.18e-28TCP family protein