PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo14G0042300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family LBD
Protein Properties Length: 311aa    MW: 33058.5 Da    PI: 7.8297
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo14G0042300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.94.2e-304107199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C ++p++     p++q +++ +++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q
  Spipo14G0042300   4 SCNGCRVLRKGCSENCSIRPCLqwissPESQGNATVFLAKFYGRAGLMNLINEGPENLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWHLCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallke 99 
                      ++++++l ++
  Spipo14G0042300  98 AAVDAVLKGT 107
                      **99988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.7573109IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWISS PESQGNATVF LAKFYGRAGL MNLINEGPEN  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV DAVLKGTPIL QISSDSATSA  120
PAPPFIKASS FDIRHVAKDH SSDGYDLHKV NKATRPRFKR SANPSQIHRD GAAAVVAAAG  180
KPNSDRPLTG DSQFRRMRSE ESFASQTSAS GEEAQDHAGD GESREHDSAF SAPTSMVTSH  240
SLDSGKADSG EVELELTLGF EPVHHSPXNR SSSSSSSSHS PRRSSGHPAA AAPASSSCRV  300
GVDLDLHLPL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265141.13e-98PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-79LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1D1Y8255e-98A0A1D1Y825_9ARAE; LOB domain-containing protein 40 (Fragment)
STRINGXP_010265141.11e-97(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-74LOB domain-containing protein 41