PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0060600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GATA
Protein Properties Length: 355aa    MW: 38188.7 Da    PI: 6.6745
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0060600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA481.7e-15242278135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Spipo0G0060600 242 CQNCGISEkaTPAMRRGPAGPRSLCNACGLMWANKGT 278
                     *******99*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132010.90882117IPR010399Tify domain
PfamPF062001.3E-784107IPR010399Tify domain
PROSITE profilePS5101713.046171213IPR010402CCT domain
PfamPF062032.9E-15171212IPR010402CCT domain
SMARTSM004019.3E-9236290IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.3E-14240280IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.66E-10240290No hitNo description
CDDcd002023.48E-13241280No hitNo description
PfamPF003202.3E-13242278IPR000679Zinc finger, GATA-type
PROSITE patternPS003440242269IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSEASHQEHP QPMYGHEATA GGVEQRAKSI PIRIDDGDGG GVMEDAVAGG WDGGDKMDGV  60
MVEVPEDHEH YADAVDAAMP LTSQTSNQLT LLFQGEAYVF DSVTPEKGHD RSPHRKRNLT  120
KEDQDKMVQA VMLLLGGCEV PTSGGSMALQ CQPENRGLDD ILRRTNIPAK RVASLIRFRE  180
KRKERCFDKK IRYNVRKEVA LRMQRRKGQF AGKADPHDGT AASSSSDPAQ SSNNEALRET  240
KCQNCGISEK ATPAMRRGPA GPRSLCNACG LMWANKGTLR SPMRANKTAP QSSVPSVGQG  300
GESNDVGTGS DNKALIVVGT DHNSVATTAG MSAEGIPGEL HKEELIDEDV KTRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794051.11e-123PREDICTED: GATA transcription factor 28-like
SwissprotA2XKR74e-84GAT18_ORYSI; GATA transcription factor 18
TrEMBLM0T4491e-103M0T449_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P04510_0011e-103(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-56ZIM-like 1