PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g089170.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 92aa    MW: 10469.7 Da    PI: 5.6025
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g089170.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.6e-10451147
                        TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                        +  WT eE + + +a + + ++   +W+ +a+  g  +t++++k+++qk+
  Sopim12g089170.0.1  4 KSTWTREENKMFENALAIFDKDthdRWSNVAKATG--KTEEEVKLHYQKL 51
                        578*******************************8..9**********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.259152IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.3E-6353IPR009057Homeodomain-like
SMARTSM007173.0E-9354IPR001005SANT/Myb domain
PfamPF002491.2E-7451IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-13459IPR009057Homeodomain-like
CDDcd001677.51E-6652No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MATKSTWTRE ENKMFENALA IFDKDTHDRW SNVAKATGKT EEEVKLHYQK LVEDIENIEA  60
DLVPLPKYNE VSVDHDNKTT TTNKGKIHAP I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-21268673RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-153HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010314641.12e-55protein RADIALIS-like 5
SwissprotQ8GW758e-25RADL5_ARATH; Protein RADIALIS-like 5
TrEMBLA0A3Q7JDX52e-45A0A3Q7JDX5_SOLLC; Uncharacterized protein
STRINGSolyc12g089170.1.16e-61(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.13e-27RAD-like 5