PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g068370.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 373aa    MW: 41735.2 Da    PI: 8.3378
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g068370.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.4e-1069109441
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                          k  rr+++NReAAr+sR+RKka++++Le+   + ++Le+e
  Sopim11g068370.0.1  69 AKTLRRLAQNREAARKSRLRKKAYVQQLETsrmRLAQLEQE 109
                         6889************************9833344444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-866142IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.25568112IPR004827Basic-leucine zipper domain
PfamPF001701.4E-769109IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.21E-670112No hitNo description
CDDcd147082.65E-2170122No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-771113No hitNo description
PROSITE patternPS0003607388IPR004827Basic-leucine zipper domain
PfamPF141447.9E-27150225IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MFPSWPTKVH DTLRGSSKSI GGEQSSDSDS ALNTTISSRG EANVELESPS KSNYEKKSAG  60
SNSDRVTDAK TLRRLAQNRE AARKSRLRKK AYVQQLETSR MRLAQLEQEL QRARSQGIFM  120
GGGSTGPNIS SGASMFDMDY SRWLDDDQRQ ICELRTALQA HLGDGELRII VDAYIAHYDH  180
IFLLKGVVAK SDLFHLLTGI WASPAERGFL WLGGFKPSDL IKMLITQLDP LTQQQIVGIY  240
SLQQSSQQAE EALSQGLEQL KQSLIETIAT CSVNDGMHHM AIALGKLANL ESFVHQADNL  300
RQQTIHQLHR ILTIRQSARC FMMIGEYYGR LRALSSLWAS RPRETMMADD NSCQTTSELQ  360
MIQASQHHFS MR*
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755231e-150HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010313359.10.0transcription factor TGA9-like isoform X3
RefseqXP_010313362.10.0transcription factor TGA9-like isoform X5
RefseqXP_025884127.10.0transcription factor TGA9-like isoform X5
SwissprotQ93XM61e-173TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A3Q7IZ900.0A0A3Q7IZ90_SOLLC; Uncharacterized protein
STRINGSolyc11g068370.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36832340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-164bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]