PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g042580.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 164aa    MW: 18308.3 Da    PI: 5.8541
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g042580.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-18657156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ta++Aa+a++ a+  ++g+
  Sopim11g042580.0.1  6 SEYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETAQMAAAAYDSAAFHFRGH 57
                        569****999.**********8...557***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.49E-22666No hitNo description
SuperFamilySSF541716.54E-22665IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-32765IPR001471AP2/ERF domain
SMARTSM003806.4E-35770IPR001471AP2/ERF domain
PROSITE profilePS5103222.893764IPR001471AP2/ERF domain
PfamPF008478.9E-12757IPR001471AP2/ERF domain
PRINTSPR003672.8E-10819IPR001471AP2/ERF domain
PRINTSPR003672.8E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSGITSEYRG VRKRKWGKWV SEIREPGKKT RIWLGSFETA QMAAAAYDSA AFHFRGHAAK  60
LNFPELIEHF PKPASSSPED IRLAAQQAAI TVQNTNSMAS SSHGHGAPVT VGLSPTEIQA  120
INDFPMDSPH MWTTHEDINY TYEMSDYQEM DDCLWDYSST NSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-18864360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-18864663ATERF1
3gcc_A2e-18864663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250714.11e-121ethylene-responsive transcription factor ERF021
SwissprotQ9C9I22e-50ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A3Q7JLX41e-120A0A3Q7JLX4_SOLLC; Uncharacterized protein
STRINGSolyc11g042580.1.11e-121(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-45ERF family protein