PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g052470.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 89aa    MW: 9801.92 Da    PI: 9.8658
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g052470.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-091256244
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        g+WT+   + + +a + + ++   +W+ +a+ +g g+t++++k ++
  Sopim10g052470.0.1 12 GSWTAKQNKAFEKALAVYDKEtrdRWSNVAKAVG-GKTAEEVKRHY 56
                        89******************9*************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-6761IPR009057Homeodomain-like
PROSITE profilePS512939.084964IPR017884SANT domain
SMARTSM007171.3E-81062IPR001005SANT/Myb domain
PfamPF002492.4E-71256IPR001005SANT/Myb domain
SuperFamilySSF466894.34E-131268IPR009057Homeodomain-like
CDDcd001673.79E-71460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSSMSSQHGS SGSWTAKQNK AFEKALAVYD KETRDRWSNV AKAVGGKTAE EVKRHYEILL  60
RDVFFIDNGM VPFPKYKTTG GSHNSTSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-35482179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2779441e-147AJ277944.1 Lycopersicon esculentum mRNA for SANT/MYB domain protein (fsm1 gene).
GenBankAJ5836701e-147AJ583670.1 Lycopersicon esculentum fsm1 gene for SANT/MYB protein, exons 1-2.
GenBankHG9755221e-147HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233849.11e-60SANT/MYB domain protein
RefseqXP_015055159.11e-60protein RADIALIS-like 1
SwissprotQ58FS37e-35RAD_ANTMA; Transcription factor RADIALIS
TrEMBLQ9LEG42e-59Q9LEG4_SOLLC; SANT/MYB domain protein
STRINGSolyc10g052470.1.14e-60(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-35RAD-like 1
Publications ? help Back to Top
  1. Corley SB,Carpenter R,Copsey L,Coen E
    Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73
    [PMID:15790677]
  2. Costa MM,Fox S,Hanna AI,Baxter C,Coen E
    Evolution of regulatory interactions controlling floral asymmetry.
    Development, 2005. 132(22): p. 5093-101
    [PMID:16236768]
  3. Stevenson CE, et al.
    Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus.
    Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8
    [PMID:16511186]
  4. Stevenson CE, et al.
    Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus.
    Proteins, 2006. 65(4): p. 1041-5
    [PMID:17044043]