PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g081610.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 304aa    MW: 34690.6 Da    PI: 5.4533
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g081610.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.62.5e-28127185259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s +++ ++++tY+ eHnh+
  Sopim08g081610.0.1 127 SDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSCTENGTFIVTYTAEHNHS 185
                         79*************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-30112187IPR003657WRKY domain
PROSITE profilePS5081131.559121187IPR003657WRKY domain
SuperFamilySSF1182902.35E-25123187IPR003657WRKY domain
SMARTSM007741.0E-32126186IPR003657WRKY domain
PfamPF031065.5E-24128184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDWGLQAVVI GSSSSYSANN IDFSPKLDFQ ESDHQYLSFS HEMKKEFFIS DELEELYKPF  60
YHVDGGQNML MGSSISLIPK EIIKEEKREE EQQQVVAPTS TYVPKYKKRK NEQKRVVLQL  120
KADDLSSDKW AWRKYGQKPI KGSPYPRSYY RCSSSKGCLA RKQVEQSCTE NGTFIVTYTA  180
EHNHSQPTRR NSLAGTIKSK FPNSKNTNIK KNIVKDEKIS SPHGSTSNNN LGFSPETLMI  240
DEFQEIEMND HEEIKNMFEG SDENECVSIQ EMFDGDFFAG LEDIHDGFTS SFGCNNSTFP  300
FSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-18115187274WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245564.10.0PREDICTED: probable WRKY transcription factor 29
TrEMBLK4CPF70.0K4CPF7_SOLLC; Uncharacterized protein
STRINGSolyc08g081610.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.12e-35WRKY family protein