PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g065500.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YB
Protein Properties Length: 183aa    MW: 20155.3 Da    PI: 6.3062
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g065500.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.91.1e-5622117297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         reqdrflPianvsrimkk+lPanakiskdake+vqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+y+eplk+yl+++r+
  Sopim07g065500.0.1  22 REQDRFLPIANVSRIMKKALPANAKISKDAKEVVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYIEPLKIYLQRFRD 112
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         leg+k
  Sopim07g065500.0.1 113 LEGQK 117
                         **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-5418128IPR009072Histone-fold
SuperFamilySSF471137.76E-4124128IPR009072Histone-fold
PfamPF008086.5E-282791IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-205573No hitNo description
PROSITE patternPS0068505874IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-207492No hitNo description
PRINTSPR006151.1E-2093111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MADSDNESGG HRDNSNIESS LREQDRFLPI ANVSRIMKKA LPANAKISKD AKEVVQECVS  60
EFISFITGEA SDKCQREKRK TINGDDLLWA MTTLGFEEYI EPLKIYLQRF RDLEGQKSGV  120
SGEKDHSGSV GYVEDYHGMM MMGSQHHQGH GYGTGVYNHH TGENAAGVGT GGSRFPDVGR  180
QR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-4720112193NF-YB
4awl_B1e-4720112294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-4720112294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
GenBankBT0132280.0BT013228.1 Lycopersicon esculentum clone 134470F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244067.11e-135PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233103e-73NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLK4CHM81e-135K4CHM8_SOLLC; Uncharacterized protein
STRINGSolyc07g065500.1.11e-135(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-74nuclear factor Y, subunit B3