PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g064000.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 221aa    MW: 25221.2 Da    PI: 3.9987
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g064000.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57332.82e-101292151298
              DUF573  12 eivlLqGlidfkaktgkspsd.didafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                         ++++L+++ d++     sp+    ++   +vk+s  ++k+s++ l eKi  L k f++ +++   g++p+++++ d++if+ls++iWg+
  Sopim07g064000.0.1 129 DLAILKAMCDYECIIRNSPQLsSFNNRLVYVKDSFpDLKMSREALEEKIIALCKNFNDVREQ--LGDDPRMDRPIDREIFNLSMIIWGT 215
                         489********988777666558999999999998469***********************9..***********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MLPAIGRTDE EEEGQNGNRN SEQRETEEAG GNQLGETDED RNDDYEEEED MENLGSGNNV  60
NHQNSEENGS GNQESYDENH TSWLVVVEDD EDEEEERRRA AEKGKQPMSD GGGISITELH  120
DEDEDHHLDL AILKAMCDYE CIIRNSPQLS SFNNRLVYVK DSFPDLKMSR EALEEKIIAL  180
CKNFNDVREQ LGDDPRMDRP IDREIFNLSM IIWGTKVIPR *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103560.0AC210356.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0130B18, complete sequence.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7HF321e-159A0A3Q7HF32_SOLLC; Uncharacterized protein
STRINGSolyc07g064000.1.11e-160(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1722155