PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g053410.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 245aa    MW: 27601.6 Da    PI: 9.9162
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g053410.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.33.4e-3522124299
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsss 87 
                         +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++     ++++ + +ea++ + +++ ++ 
  Sopim07g053410.0.1  22 TGRKDRHSKVYTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLDELppwnpNQIPGNTTEADALVLKQQ-PEY 111
                         79**************************************************************88887444444444444444444.222 PP

                 TCP  88 g.kaaksaakskk 99 
                         + +++ +++++++
  Sopim07g053410.0.1 112 QlQRELEENNQSR 124
                         2111111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3122109IPR005333Transcription factor, TCP
PROSITE profilePS5136931.9642482IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MKSATGGGEI VQVEGGHILR STGRKDRHSK VYTAKGPRDR RVRLAAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKNAID KLDELPPWNP NQIPGNTTEA DALVLKQQPE YQLQRELEEN  120
NQSRVNNSSN SYLMQGGSGG GGGGGEVQQQ SLGDTMKAFF PMNLGTSLMN FQNYPHEIMP  180
RSSLQNEDLV IIMRMTILPF SQIKILKQII QEWLVGIYYH KHFSIKMLIM HLLKGNPFSP  240
IFHI*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
GenBankGQ4963280.0GQ496328.1 Solanum lycopersicum TCP transcription factor 10 (TCP10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234576.11e-128TCP transcription factor 10
SwissprotQ8LPR52e-54TCP4_ARATH; Transcription factor TCP4
TrEMBLK4CFN80.0K4CFN8_SOLLC; Uncharacterized protein
STRINGSolyc07g053410.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-50TCP family protein