PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g050790.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 190aa    MW: 21960.9 Da    PI: 10.5027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g050790.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.1e-1863113255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp++ g  +r +lg++ t+e+Aa a+++ + kl+g
  Sopim05g050790.0.1  63 RYRGVRRRP-WGKFAAEIRDPKKKG--ARLWLGTYVTPEDAALAYDRTAFKLKG 113
                         8********.**********96643..************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.26E-3062123No hitNo description
SuperFamilySSF541711.18E-2163122IPR016177DNA-binding domain
SMARTSM003809.4E-3463127IPR001471AP2/ERF domain
PfamPF008473.6E-1263113IPR001471AP2/ERF domain
PROSITE profilePS5103223.61763121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-3063122IPR001471AP2/ERF domain
PRINTSPR003674.0E-126475IPR001471AP2/ERF domain
PRINTSPR003674.0E-12103123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MHQENSTQFD LSILDSPLEH QFNGFNLESI SFDRSIDHTW EKIDKNEDNI PRSSSQVSNN  60
WKRYRGVRRR PWGKFAAEIR DPKKKGARLW LGTYVTPEDA ALAYDRTAFK LKGTRALLNF  120
PHLIDTNVAE LNRVRPKQRS RLSEIIKGEE IPSPKRRNPQ LINNIAKVNS IIHMFEITSL  180
AFHPQGENK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2962127469ATERF1
3gcc_A2e-2962127469ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321615.11e-139ethylene-responsive transcription factor 13-like
TrEMBLA0A3Q7HEW41e-127A0A3Q7HEW4_SOLLC; Uncharacterized protein
STRINGSolyc05g050790.1.11e-138(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-38ethylene-responsive element binding factor 13