PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g005240.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family YABBY
Protein Properties Length: 193aa    MW: 21514.5 Da    PI: 8.157
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g005240.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY179.12.5e-5571582165
               YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekee 90 
                         ++f+  + +CyvqC++C+til+vsvP +sl  kvvtvrCGhCt+lls+nl k s +l a+ ++   + +++ ++++++++ n k  ++   
  Sopim05g005240.0.1   7 HLFELQDTICYVQCGYCTTILLVSVPCSSLCnKVVTVRCGHCTTLLSLNLIKPSlHLFASFDQ---THQPPEVDKDETDDANKKNSNS--- 91 
                         789999***********************973699**************98876266666665...4445444444333332222111... PP

               YABBY  91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165
                               +    ++ e++ +p  + v++PPekrqr+Psayn+fikeei+r+k+  P+++h++afs+aaknWahfP+
  Sopim05g005240.0.1  92 -----DEE---DQLENNVLPLNQVVNKPPEKRQRAPSAYNCFIKEEIKRLKTLYPNMTHKQAFSTAAKNWAHFPP 158
                         .....111...222334455555689***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.6E-5512159IPR006780YABBY protein
SuperFamilySSF470951.96E-8106160IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.105.3E-5109160IPR009071High mobility group box domain
CDDcd000840.00307117160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSTLNNHLFE LQDTICYVQC GYCTTILLVS VPCSSLCNKV VTVRCGHCTT LLSLNLIKPS  60
LHLFASFDQT HQPPEVDKDE TDDANKKNSN SDEEDQLENN VLPLNQVVNK PPEKRQRAPS  120
AYNCFIKEEI KRLKTLYPNM THKQAFSTAA KNWAHFPPSQ HRGGCSLGER KMAKVSAARN  180
SMVPRDSNGL IP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755179e-67HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
GenBankAC1887819e-67AC188781.2 Lycopersicon esculentum cv. Heinz 1706, chromosome 5 BAC clone C05SLm0005B15 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075232.11e-140PREDICTED: axial regulator YABBY 4
SwissprotQ9LDT38e-57YAB4_ARATH; Axial regulator YABBY 4
TrEMBLK4BW551e-143K4BW55_SOLLC; Uncharacterized protein
STRINGSolyc05g005240.1.11e-143(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.15e-58YABBY family protein