PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g054150.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YB
Protein Properties Length: 189aa    MW: 21018.4 Da    PI: 8.1841
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g054150.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.62e-5425120297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         +e d+flPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddl+wa++tlGfe+yv plk yl+kyre
  Sopim04g054150.0.1  25 KELDKFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLVWAMTTLGFENYVGPLKGYLNKYRE 115
                         788**************************************************************************************** PP

               NF-YB  93 legek 97 
                          egek
  Sopim04g054150.0.1 116 SEGEK 120
                         **997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.7E-5219133IPR009072Histone-fold
SuperFamilySSF471139.63E-4028131IPR009072Histone-fold
PfamPF008085.8E-273094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-185876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.4E-187795No hitNo description
PRINTSPR006151.4E-1896114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MTGKKTLNSS VESPLSSNTS DNFSKELDKF LPIANVSRIM KKSLPANAKI SKEAKETVQE  60
CVSEFISFIT GEASDKCQRE KRKTINGDDL VWAMTTLGFE NYVGPLKGYL NKYRESEGEK  120
NSMARNDETS HEPIITSTNN IIGTSYNNNN NNNNVTNFSL ARPEFIQSYK QNYGENLTSK  180
ANLHGVGW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B2e-4525115292Transcription factor HapC (Eurofung)
4g91_B2e-4525115292Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319776.11e-137PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233102e-60NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLK4BSH31e-137K4BSH3_SOLLC; Uncharacterized protein
STRINGSolyc04g054150.1.11e-137(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.15e-61nuclear factor Y, subunit B3