PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g118420.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-X1
Protein Properties Length: 1038aa    MW: 112571 Da    PI: 8.292
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g118420.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.49.8e-06325343119
            zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                         CG+H+C+++CH GpC+ C+
  Sopim03g118420.0.1 325 CGRHRCEQTCHVGPCGHCQ 343
                         ******************7 PP

2zf-NF-X116.32.2e-05389406118
            zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                         CG+H C +lCH+GpC+ C
  Sopim03g118420.0.1 389 CGNHICRELCHPGPCGDC 406
                         ****************99 PP

3zf-NF-X121.64.7e-07447464118
            zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                         CG H+C++ CH G+C pC
  Sopim03g118420.0.1 447 CGVHRCEAVCHSGDCAPC 464
                         ****************** PP

4zf-NF-X118.73.8e-06543561119
            zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                         CG+H+C++lCH G CppC 
  Sopim03g118420.0.1 543 CGQHSCESLCHSGHCPPCL 561
                         ******************6 PP

5zf-NF-X118.83.5e-06653668116
            zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                         CG H+C ++CH+ pC+
  Sopim03g118420.0.1 653 CGLHSCARTCHPSPCD 668
                         ***************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.91E-5146218No hitNo description
PROSITE profilePS500168.84155216IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590158213IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.126158214IPR001841Zinc finger, RING-type
CDDcd060081.35E-5247308No hitNo description
SMARTSM004380.023270288IPR000967Zinc finger, NF-X1-type
PfamPF014227.7272287IPR000967Zinc finger, NF-X1-type
CDDcd060081.68E-11315363No hitNo description
PfamPF014227.1E-4325342IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021325344IPR000967Zinc finger, NF-X1-type
CDDcd060084.90E-8379424No hitNo description
PfamPF014223.0E-4389406IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0014389408IPR000967Zinc finger, NF-X1-type
CDDcd060083.24E-13437485No hitNo description
PfamPF014222.4E-6447464IPR000967Zinc finger, NF-X1-type
SMARTSM004385.6E-5447466IPR000967Zinc finger, NF-X1-type
PfamPF0142217505516IPR000967Zinc finger, NF-X1-type
SMARTSM00438200505539IPR000967Zinc finger, NF-X1-type
CDDcd060081.54E-8533585No hitNo description
PfamPF014229.2E-5543560IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4543562IPR000967Zinc finger, NF-X1-type
SMARTSM004380.34600618IPR000967Zinc finger, NF-X1-type
PfamPF014226.6E-4653668IPR000967Zinc finger, NF-X1-type
SMARTSM004380.011653683IPR000967Zinc finger, NF-X1-type
PfamPF0142217685711IPR000967Zinc finger, NF-X1-type
SMARTSM004380.046692713IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3302.3E-4933978IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1038 aa     Download sequence    Send to blast
MSFPAQNNRR NNNSNRPRNN NNNPVVQSGG ARREWVARGS APTNTVPFSA APVTPVTTTT  60
VVTPVFGGNG RDNENVSSAP FNRFQNQNQT YGEPKFNRGM YGNQRGRGRG SYNHQENKME  120
RPVREVSGRI NQERVKDPNL PQLVQEIEEK LLKGNIECMI CYDMVRRSAP MWSCSSCYSI  180
FHLHCTKKWA RAPTSVDTSA EKNQRFNWRC PGCQSVQLTS SRDIRYLCFC GKRQDPPSDL  240
YLTPHSCGEP CGKKLEKELP GNGLSEEDLC PHVCVLQCHP GPCPPCKAFA PARSCPCGKE  300
VITTRCSDRK SVLTCGQQCG KLLDCGRHRC EQTCHVGPCG HCQIVVDAHC FCKKKTESLL  360
CGDMGVKGDI KMEDGVFSCN SVCGKKLCCG NHICRELCHP GPCGDCALLP SKVKTCCCGK  420
TSLEEERHSC LDPIPTCSKV CGKRLRCGVH RCEAVCHSGD CAPCLVPVTQ RCRCGSTSRT  480
VECYKTQAED EQFTCDRPCG QKKNCGRHRC SERCCPLSNP KNSITGGWNP HFCSMPCEKK  540
LRCGQHSCES LCHSGHCPPC LETIFTDLTC ACGRTSIPPP LPCGTPLPSC QLPCSVSQPC  600
GHPPTHSCHF GDCLPCAVPV AKECVGGHVI LRNIPCGSKD IRCNKLCGKT RQCGLHSCAR  660
TCHPSPCDVS AGPSNGSRAS CGQTCGAPRR DCRHTCTALC HPSSSCPDVR CEFPVTITCS  720
CGRITANVPC DAGGQIVDSV LEASIIHKLP SSLQPIEING KKVPLGQRKL TCDDECAKME  780
KKKVLSDAFG ITPPNLESLH FGENAAVSEV LGDLLRRDAK WVLSIEERCK FLVLGRSRGG  840
LNALKVHVFC PMLKEKRDAI RLIAARWKLS VNAAGWEPKR FIAVHVIPKS KAPSRILGPK  900
GCTVNNIVQP AVFDSLVDMD PRLVVALFDL PRDADISALV LRFGGECELV WLNDKNALAV  960
FSDPARAATA MRRLDQGSAY CGAAVVHQSG VASAVASTTN VWGVSGGAKD AGGVASALKG  1020
NPWKKAVVQD PFCLEGE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
GenBankAC2384620.0AC238462.1 Solanum lycopersicum chromosome 3 clone C03HBa0203H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235756.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLK4BLZ30.0K4BLZ3_SOLLC; Uncharacterized protein
STRINGSolyc03g118420.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1