PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g096850.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 866aa    MW: 97286.7 Da    PI: 6.9623
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g096850.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.91.2e-1664139190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +f+++YA++vGFs+ + + ++ k +g i++ +f Cske  r++++++              C+a+l++++++++ w+vtk++++HnH+++
  Sopim01g096850.0.1  64 NFFDAYARRVGFSIHVGQYSRAKPDGPIISWDFSCSKEILRRKNTES--------------CNAMLRIERKSSDGWVVTKFVEDHNHSIV 139
                         69*************************************99998777..............**************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1364139IPR004330FAR1 DNA binding domain
PfamPF105514.2E-29279371IPR018289MULE transposase domain
PROSITE profilePS5096611.165556592IPR007527Zinc finger, SWIM-type
PfamPF044348.5E-11557590IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-8567594IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MNNKVIDIEG QKRKKSGERA VEPNQNPKQG LPDNFTERDT IIEVDGEEKP YVGMEFQTEE  60
AAKNFFDAYA RRVGFSIHVG QYSRAKPDGP IISWDFSCSK EILRRKNTES CNAMLRIERK  120
SSDGWVVTKF VEDHNHSIVN PSKVHYLRPR KHFAGASKTV GEIPGAPTDI MVPPVVVPVE  180
GNHAFVSSNE GVKDAPPMES NRVTKNFSPV IPIMFIQPCS RKRTLGRDAH NLLDYFKKMQ  240
AENPGFYYAI QLDDENRMTN AFWADARSRI AYSHFGDAVI FDTMYRPNQF QVPFAPFTGV  300
NHHGQMVLFG CGLLLDESES SFTWLFRTWL SSMNNRPPVS ITTDQDRAIK AAVNLVLPGT  360
RHCICKWHIL REGQERLAHI YMAHPSFYGE LYSCINYSET IEDFESCWTS VLDKYDLGKN  420
EWLQAVYNAR DQWAPVYFRD TFFAALPSNQ GVTSFFDGYV NQQTTLPMFF KQYERALESS  480
LEREIASDFD TNCTAPMLRT PSPMEQQAAN LFTKKVFAKF QEELVETFAH TANKIDGDET  540
LSKFRVAKYE QDDKAYIVML NLAQMKASCS CQMFEYSGIL CRHILTVFTV TNVLTVPSLY  600
ILKRWTRNAK VGQGSDEDIV KQGINSLTSR FNYLCLEALR YAEEGAVSAE TFDAAVSALK  660
DGLRKISVVA KSVGKPLSSQ GSESTQDGSI KKTPATSDTL PSLWAWQDTM PRQFNLNDGG  720
LTAGDLNQPT MTPVAINHDG GLADNVVVYT CFKSMTWVIE NKSPASKVAV INLKLQDYGK  780
NPAGETEVQF RLTRVALEPM LNSMVCISQQ LSLPANRVAV INLKLQDTKT PSGETEVKFQ  840
VSRDTLGSML RSMVAKLLAA VLIII*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230060.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_010327464.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_010327469.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_010327473.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A3Q7EM510.0A0A3Q7EM51_SOLLC; Uncharacterized protein
STRINGSolyc01g096850.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]