PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g067130.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YB
Protein Properties Length: 139aa    MW: 15010.6 Da    PI: 5.9617
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g067130.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB168.29.8e-5322117297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         reqdr+lPianv+rimk++lP nakisk+aket+qecvsefi+fvt+easdkc++e+rkt+ngdd++wal+tlGf+dy  +lk yl++yre
  Sopim01g067130.0.1  22 REQDRLLPIANVGRIMKNILPPNAKISKEAKETMQECVSEFIGFVTGEASDKCRKERRKTVNGDDICWALGTLGFDDYSGALKRYLHRYRE 112
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                          egek
  Sopim01g067130.0.1 113 SEGEK 117
                         **997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.2E-4918123IPR009072Histone-fold
SuperFamilySSF471131.23E-3724122IPR009072Histone-fold
PfamPF008081.4E-262791IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-155573No hitNo description
PRINTSPR006151.4E-157492No hitNo description
PRINTSPR006151.4E-1593111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MSQQNIGGAS SSNDEGAAGS SREQDRLLPI ANVGRIMKNI LPPNAKISKE AKETMQECVS  60
EFIGFVTGEA SDKCRKERRK TVNGDDICWA LGTLGFDDYS GALKRYLHRY RESEGEKVNQ  120
EQAGGGASGS NQPRNLLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B1e-4322112292Transcription factor HapC (Eurofung)
4g91_B1e-4322112292Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229223.13e-99PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822482e-61NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLK4AWW23e-99K4AWW2_SOLLC; Uncharacterized protein
STRINGSolyc01g067130.2.19e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.19e-63nuclear factor Y, subunit B5