PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g033150.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 299aa    MW: 32771 Da    PI: 6.5077
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g033150.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.82.7e-3449103155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       +prlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl
  Sopen12g033150.2  49 RPRLRWTAELHERFVDAVTQLGGPDKATPKTIMKAMGVKGLTLYHLKSHLQKYRL 103
                       59****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.0346106IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-3246104IPR009057Homeodomain-like
SuperFamilySSF466892.87E-1748105IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-2450104IPR006447Myb domain, plants
PfamPF002492.4E-951102IPR001005SANT/Myb domain
PfamPF143792.3E-25147192IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MYSSLGIDGN GGVNEYHHHH HLPSLQSSLS GEMTNLAGDA CLVLTADHRP RLRWTAELHE  60
RFVDAVTQLG GPDKATPKTI MKAMGVKGLT LYHLKSHLQK YRLGKQSKEA AESYKDESCV  120
AESQDTSPSA SGSSKVVAQD INDCGYQVTE AFRVQMEVQR RLQEQLEVQR HVQLRIEAQG  180
KYLQTILEKA CKVLNYTSVE SPDLDTAREQ LSELAIKGAT NNCDGIVPVS SLPEVVTSFE  240
NKNASDMPAS IGDCLPSTTT MASPTSISAL KKRPRALANG DVLPVENNMT QVQWMMTNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-1949105258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-1949105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-1949105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-1949105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-1949105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-1949105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-1949105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-1949105258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059334.10.0protein PHR1-LIKE 3-like isoform X1
SwissprotQ8LAJ71e-100PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A3Q7JF250.0A0A3Q7JF25_SOLLC; Uncharacterized protein
STRINGSolyc12g098370.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37912344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.19e-88G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]