PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g007010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 340aa    MW: 38923.5 Da    PI: 8.5668
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g007010.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.2e-17109158255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+WvAeIr p++   r+r +lg+f +aeeAa a++  + +l+g
  Sopen12g007010.1 109 RYRGVRQRH-WGKWVAEIRLPRK---RTRLWLGTFESAEEAAFAYDVEAFRLRG 158
                       8*******9.**********954...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-33108168No hitNo description
SMARTSM003807.3E-38109172IPR001471AP2/ERF domain
PfamPF008471.5E-10109158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-31109167IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-22109167IPR016177DNA-binding domain
PROSITE profilePS5103223.604109166IPR001471AP2/ERF domain
PRINTSPR003673.0E-10110121IPR001471AP2/ERF domain
PRINTSPR003673.0E-10132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSMYRPLKKL KISSSSQHNS LRSSGDGVEP VAQRIRARGY EPQFRFPFAL DDPPLSSCHI  60
NWQSLTQNQT MISFAPQSCF NKCRIIDNGT RTTTMMNVYG TVSSPASKRY RGVRQRHWGK  120
WVAEIRLPRK RTRLWLGTFE SAEEAAFAYD VEAFRLRGTD ARLNFPHLFL GDLAPFDNNI  180
NVTNSASSST TSFAKNPFQI QHNKRFIRQC RNKNRVPSAV EQSTSVFDKE IMMQDKAAYN  240
KPLPYDPSLG SVHNESLVHE TSQIKMFDGS DFYESTPKYT NNIQQENSDM WKNVLQSTSF  300
GNHTICTDDD LQQQQQQCDF TITDPGFGDD VFDFSSKLLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20108166160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20108166463ATERF1
3gcc_A2e-20108166463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060096.10.0uncharacterized protein LOC107005968
TrEMBLM1B8H70.0M1B8H7_SOLTU; Uncharacterized protein
STRINGSolyc12g013660.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.17e-32ERF family protein