PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g005500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 298aa    MW: 33389 Da    PI: 4.7351
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g005500.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-1677128155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Sopen12g005500.1  77 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 128
                       89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.179142IPR001471AP2/ERF domain
SMARTSM003800.001548IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-8644IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.8E-9743IPR001471AP2/ERF domain
PfamPF008474.2E-1277128IPR001471AP2/ERF domain
CDDcd000187.41E-2577138No hitNo description
SuperFamilySSF541717.85E-1877138IPR016177DNA-binding domain
PROSITE profilePS5103218.33478136IPR001471AP2/ERF domain
SMARTSM003801.2E-2478142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-1878137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MVDANGNNAV YLGAYDDEGT AAHAYDLAAL KYWGSETILN FPVSTYEKEI IEMENQSREE  60
YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA TQEEAATAYD  120
MAAIEYRGLN AVTNFDLSRY IKWLKPNKNN QSNPNVETNM IPTPNHSIGS TTIATTTTTS  180
SFTTLVYPDS QFTTKMPISD VSISQFSRPS SATSALGLLL QSTKFKEMME MTLAAECPPA  240
PIELPDPDPP QSSNFPEDIK TYFDTQEFGN FGHEQGEDLV FNEINSLMQP HLQFDYDA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769354.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN42e-72AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A3Q7J3M70.0A0A3Q7J3M7_SOLLC; Uncharacterized protein
STRINGSolyc12g010490.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.28e-64AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]