PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g030250.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 484aa    MW: 53518.7 Da    PI: 7.1418
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g030250.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17162211155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sopen11g030250.2 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211
                       78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.89E-16162220IPR016177DNA-binding domain
PfamPF008475.6E-9162211IPR001471AP2/ERF domain
CDDcd000181.31E-11163221No hitNo description
PROSITE profilePS5103217.794163219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-17163220IPR001471AP2/ERF domain
SMARTSM003801.3E-32163225IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-6254298IPR016177DNA-binding domain
CDDcd000183.03E-13254299No hitNo description
SMARTSM003805.7E-13255303IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MMLDLNLSAI YDGKHSLADE SGSSNSSARN VEASSSAGDD ETCSTRAAAA GDMFAFNFDI  60
LKVGGGGGGG GETRRSCSNN DDEEGYDENR SDFVTQQLFP MDNNAELNRT HTSRRPDWVD  120
PSVDPPNTVS FREVQQMGRL QQQQQQQQPV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI  180
WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEEDMKQM KNLSKEEFVH  240
VLRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAIKCNGR EAVTNFEPST  300
YEGEINSNPQ SEGTQQDLDL NLGIATSSPK EIERSSSFQY HPYDMQEASK SQMDKSGSPI  360
VGSSHYKALP AVTSEQAHLW NGAYSNLIPN YEERVSGKRI DVGTSHGHPN WAMQMHSQVG  420
TTPMSMFSAA ASSGFSTPAT TASASQMSGP NNPNTLNLSF ASYSSPSTNT TQYYYQIRPQ  480
LPPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869530.0HQ586953.1 Solanum lycopersicum AP2 transcription factor SlAP2d mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059029.10.0ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK031e-108RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A3Q7J1X40.0A0A3Q7J1X4_SOLLC; Uncharacterized protein
STRINGSolyc11g072600.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-105related to AP2.7