PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g030250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 499aa    MW: 55246.6 Da    PI: 6.7959
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g030250.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17162211155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sopen11g030250.1 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211
                       78*******************......55************************997 PP

2AP241.14.4e-13254304155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Sopen11g030250.1 254 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 304
                       89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-9162211IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-16162220IPR016177DNA-binding domain
CDDcd000181.43E-11163221No hitNo description
Gene3DG3DSA:3.30.730.103.7E-17163220IPR001471AP2/ERF domain
SMARTSM003801.3E-32163225IPR001471AP2/ERF domain
PROSITE profilePS5103217.794163219IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-17254313IPR016177DNA-binding domain
CDDcd000188.86E-26254314No hitNo description
PfamPF008471.3E-8254304IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15255312IPR001471AP2/ERF domain
SMARTSM003802.5E-32255318IPR001471AP2/ERF domain
PROSITE profilePS5103215.527255312IPR001471AP2/ERF domain
PRINTSPR003675.5E-6256267IPR001471AP2/ERF domain
PRINTSPR003675.5E-6294314IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MMLDLNLSAI YDGKHSLADE SGSSNSSARN VEASSSAGDD ETCSTRAAAA GDMFAFNFDI  60
LKVGGGGGGG GETRRSCSNN DDEEGYDENR SDFVTQQLFP MDNNAELNRT HTSRRPDWVD  120
PSVDPPNTVS FREVQQMGRL QQQQQQQQPV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI  180
WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEEDMKQM KNLSKEEFVH  240
VLRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI  300
KCNGREAVTN FEPSTYEGEI NSNPQSEGTQ QDLDLNLGIA TSSPKEIERS SSFQYHPYDM  360
QEASKSQMDK SGSPIVGSSH YKALPAVTSE QAHLWNGAYS NLIPNYEERV SGKRIDVGTS  420
HGHPNWAMQM HSQVGTTPMS MFSAAASSGF STPATTASAS QMSGPNNPNT LNLSFASYSS  480
PSTNTTQYYY QIRPQLPPP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869530.0HQ586953.1 Solanum lycopersicum AP2 transcription factor SlAP2d mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059028.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotB8AXC31e-107AP21_ORYSI; APETALA2-like protein 1
TrEMBLF6KQN40.0F6KQN4_SOLLC; AP2 transcription factor SlAP2d
STRINGPGSC0003DMT4000653130.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-116related to AP2.7