PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g024740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 324aa    MW: 36170.9 Da    PI: 9.0819
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g024740.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-103780245
                      XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                      k+ k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Sopen11g024740.1 37 KDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQEL 80
                      567899*************************9888888777655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.5E-83583No hitNo description
SMARTSM003383.3E-93699IPR004827Basic-leucine zipper domain
PfamPF001701.1E-73881IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4613882IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.56E-74083No hitNo description
PROSITE patternPS0003604358IPR004827Basic-leucine zipper domain
PfamPF141442.2E-31123197IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MADISPSTST DADTEDKNRF LNQQLCAVAS DGSDRPKDQK TLRRLAQNRE AARKSRLRKK  60
AYVQQLESSR MKLTQLEQEL QRARQQGIFI SGSGDQSQSM SGNGALAFDV EYARWLEEQN  120
RRINELRGAV NSHAGDAELR IIVDGILAHY DDIFRIKGDA AKADVFHILS GMWKTPAERC  180
FLWLGGFRSS ELLKLLINQL EPLTEQQLLA INNLQQSSQQ AEDALSQGME ALQQSLAETL  240
AGSLGPSGSS GNVANYMGQM AMAMGKLGTL EGFIRQADNL RQQTLQQMHR ILTTRQSARA  300
LLAITDYFSR LRALSSLWLA RPRE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0314870.0AF031487.1 Nicotiana tabacum bZIP transcription factor (TGA2.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010313245.10.0PREDICTED: transcription factor HBP-1b(c38)
RefseqXP_015056595.10.0PREDICTED: transcription factor HBP-1b(c38)-like
RefseqXP_006356348.10.0PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLK4D9A80.0K4D9A8_SOLLC; Uncharacterized protein
TrEMBLM1AK430.0M1AK43_SOLTU; Uncharacterized protein
TrEMBLA0A0V0I8830.0A0A0V0I883_SOLCH; Putative transcription factor HBP-1b(C1)-like
STRINGPGSC0003DMT4000244270.0(Solanum tuberosum)
STRINGSolyc11g064950.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-147TGACG motif-binding factor 6