PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g018670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 173aa    MW: 19895.4 Da    PI: 5.8919
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g018670.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19e-181363256
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       y+GVr +k +g+Wv+eIr+p   gk++r++lg++  ae+Aa+a++ a+  l+ge
  Sopen11g018670.1 13 VYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYEKAEMAAAAYDVAAFHLKGE 63
                      59****999.**********8...557***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-201372IPR016177DNA-binding domain
PROSITE profilePS5103222.1421372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-291373IPR001471AP2/ERF domain
SMARTSM003801.2E-301378IPR001471AP2/ERF domain
PfamPF008471.7E-111363IPR001471AP2/ERF domain
CDDcd000184.66E-191474No hitNo description
PRINTSPR003672.3E-91425IPR001471AP2/ERF domain
PRINTSPR003672.3E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MENDQESKNN MDVYRGVRKR KWGKWVSEIR EPGKKTRIWL GSYEKAEMAA AAYDVAAFHL  60
KGERPNLRLN FPELIHTFPK PSSSRPEDVQ MAAHEAAMRF KPSIDDHPEE CGVGPVRVGL  120
SPSQIQAINE SPLDSPKMWM ELAGALLPVR EYTCPTDYFE DETQHHHESI WDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-151477668ATERF1
3gcc_A1e-151477668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058008.11e-129ethylene-responsive transcription factor ERF022-like
SwissprotQ9LQ282e-47ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA0A3Q7IWN01e-125A0A3Q7IWN0_SOLLC; Uncharacterized protein
STRINGSolyc11g042560.1.11e-125(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.18e-49ERF family protein