PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g010700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 374aa    MW: 39889.9 Da    PI: 7.6554
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g010700.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.56.5e-40821963115
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                       ++k++++++h+kv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +ss+ + s++      
  Sopen11g010700.1  82 VAKKPSKDRHSKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNVSTRSSGTTISAPpsksap 174
                       5799****************************************************************9998777777777766666433444 PP

               TCP  89 ......kaaksaakskksqksaasalnlakesr 115
                             +            + +a++l ++++ +
  Sopen11g010700.1 175 lfihgaS-----------ASASAAMLGFHHHLS 196
                       4554433...........444444555555333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.24887141IPR017887Transcription factor TCP subgroup
PfamPF036341.2E-3787201IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEFMEPHRKK LGDASNHHQD NQEETPSSLQ LISPHQSQRD PSTPGSNHPH GPFMGSISMQ  60
SISPTSTNSS TPNNNTISTL KVAKKPSKDR HSKVDGRGRR IRMPALCAAR VFQLTRELGH  120
KSDGETIEWL LQQAEPAIIA TTGTGTIPAN FSTLNVSTRS SGTTISAPPS KSAPLFIHGA  180
SASASAAMLG FHHHLSTANT GFIQDPDENY MKKRFREDTT TSGATSPSAD KPGSDSSKPG  240
SSLIPGQAMW AVAPAGGNVG NGFWMLPVSG GTGSTTVSVG AGQSDHQLWQ YKSSRIGGLE  300
FPGGGRFSPV QLGSMVLQQS HPVQQLGSNM GMLNAYNNNN NSRVDLGMNL EHHHNQTQHQ  360
DSDSGDENHN DSQS
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056535.10.0transcription factor TCP23-like
SwissprotQ9C5187e-66TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A3Q7JKS50.0A0A3Q7JKS5_SOLLC; Uncharacterized protein
STRINGSolyc11g020670.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-44TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]