PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g008490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARF
Protein Properties Length: 622aa    MW: 68362 Da    PI: 5.5207
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g008490.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23110212199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+ltpsd+++ g +++p+ +a+++        +++ +   l+++d +g  We+++iyr++++r++lt+GW++Fv++++L +gD+ vF++  
  Sopen11g008490.1 110 FVKILTPSDANNGGGFSVPRFCADSIyprldfeAEPPVQ--NLSIRDIKGVAWEFRHIYRGTPRRHLLTTGWSKFVNSKQLVAGDSAVFMR-- 198
                       89*********************999*****86555555..7************************************************4.. PP

                       S.SEE..EEEEE-S CS
                B3  87 r.sefelvvkvfrk 99 
                       r  + +l+v+v+r+
  Sopen11g008490.1 199 RtANNQLYVGVRRA 212
                       4488889****996 PP

2Auxin_resp82.41e-27257340183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       +a++a+ + +Fev  +Pr  ++ Fvvk+++v+ al+++++vGmR+kma+e edss++ + +Gtv++v   ++  W++S+Wr+L+
  Sopen11g008490.1 257 VAEKAARGVPFEVSCYPRDDWAGFVVKAQEVQMALNMPWTVGMRVKMAVEAEDSSRTACyQGTVSSVILNESGPWRGSPWRMLQ 340
                       6789999***************************************************99**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-29104219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-30106217IPR015300DNA-binding pseudobarrel domain
CDDcd100173.61E-18109211No hitNo description
SMARTSM010196.9E-15110213IPR003340B3 DNA binding domain
PfamPF023621.3E-21110212IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548110213IPR003340B3 DNA binding domain
PfamPF065071.7E-25258340IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MQAPTVADRE VDPIVWRAIA GNSVKIPPVG TRVYYFPQGH AEHATFTSPA VMSPGMPAFT  60
LCRVLSVRFL AESDTDEVYA RIFLHPISQS EVDEVTMREE EVVEDEIVSF VKILTPSDAN  120
NGGGFSVPRF CADSIYPRLD FEAEPPVQNL SIRDIKGVAW EFRHIYRGTP RRHLLTTGWS  180
KFVNSKQLVA GDSAVFMRRT ANNQLYVGVR RAIRRNDDSQ KWTSSFLMRE HINNGGSPDV  240
SWGIRKGRMT MEAVAAVAEK AARGVPFEVS CYPRDDWAGF VVKAQEVQMA LNMPWTVGMR  300
VKMAVEAEDS SRTACYQGTV SSVILNESGP WRGSPWRMLQ ITWEEPEVLQ HANRVNPWQV  360
ECFPPIPQFL PPSKKIKLPN GLLPDGERSP FPMTGLGSFP MTGLGNFPMT GLGNFPMTGL  420
GSFPMTGLGS FHVTGLGSFP MTGLGNSTIG LSSPSLGNFT SSPAGMQGAR HDQVSVSSLS  480
NVKSNNLGLC TNNSLDEEIK AKLDSVSPKL NIGSSYSDNL SLDSQSSVHF GDNELITKPG  540
SSSFTKDRFS TFQLFGKVIH VERVEGALDG FGFSESDNVE VYKEIDDPSN SDISPNKDDP  600
SNSDVSPNKP FKLFDNPDVQ HE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A4e-671536123353Auxin response factor 1
4ldy_B4e-671536123353Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4569230.0HQ456923.1 Solanum lycopersicum auxin response factor 17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057040.10.0auxin response factor 17
RefseqXP_027768718.10.0auxin response factor 17
TrEMBLA0A3Q7ISU20.0A0A3Q7ISU2_SOLLC; Auxin response factor
STRINGXP_009791106.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95601924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-126auxin response factor 17