PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g008200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 491aa    MW: 54724.6 Da    PI: 5.2238
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g008200.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS338.61.1e-1031054851374
              GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsev 87 
                       lv+lL+++Aea++  +++  la+ +L rl+elasp+g ++m+RlaayfteAL+a + +s s++ ++ ++ + + k+   + ++laa++l++++
  Sopen11g008200.1 105 LVHLLMAAAEALTGVNKSreLARVILVRLKELASPNGaTNMERLAAYFTEALQALMEGSASGTLHTKHMFSPNYKDehrQGDVLAAFQLLQDM 197
                       68***********85554449****************99*******************99988776644444433334599************ PP

              GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                       sP++kf+h+taNqaI e+v +++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT+++++ sg  s  +++etg+rL+ fA+++g pf
  Sopen11g008200.1 198 SPFVKFGHFTANQAIFESVTHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRSGSGrrSFGTVQETGRRLTAFAASIGQPF 290
                       *************************************************776556*********888899999******************** PP

              GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysal 267
                       +f+    ++ e +++ + ++ +gEal++n++l+l ++  +  ++     ++L+  k+l+P++v++ve+e+    ++e F+ rf+++l++ysal
  Sopen11g008200.1 291 SFHHCRLDSDEIFKPTNVKLVRGEALIINCMLHLPHFSYRASDS---VASFLSGSKTLNPRLVTLVEEELRPigDEEGFVGRFMDTLHHYSAL 380
                       ****99999999************************98554444...459*******************987767889*************** PP

              GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslv 359
                       +dslea++p +s++r+ vEr++lg++i+  +a   ++r e+++   +W e+l+ +GF + ++s  + +qaklll  ++ dgyr+ee   + lv
  Sopen11g008200.1 381 YDSLEAGFPLQSRARALVERVFLGPRITGSLARMYRARGEEER--CSWGEWLSGVGFCESNISFANHCQAKLLLGLFN-DGYRMEEIgTNKLV 470
                       ************************************9877666..89*******************************.******9758999* PP

              GRAS 360 lgWkdrpLvsvSaWr 374
                       lgWk+r+L+s+S W+
  Sopen11g008200.1 471 LGWKSRRLLSASIWT 485
                       **************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.06679465IPR005202Transcription factor GRAS
PfamPF035143.8E-101105485IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MATIVDETIS DFDCYGSLSI ASTTITTTTT ATTSSSSWND WSPVFDWDVF SGGDNFQDLI  60
ESMVQGSGNC FYKSEHQDCA EFMEEEEESG DSNNNQSEDI DGLKLVHLLM AAAEALTGVN  120
KSRELARVIL VRLKELASPN GATNMERLAA YFTEALQALM EGSASGTLHT KHMFSPNYKD  180
EHRQGDVLAA FQLLQDMSPF VKFGHFTANQ AIFESVTHDR RVHIVDYDIM EGIQWASLMQ  240
ALVSRKDGPP TPHLRITALS RSGSGRRSFG TVQETGRRLT AFAASIGQPF SFHHCRLDSD  300
EIFKPTNVKL VRGEALIINC MLHLPHFSYR ASDSVASFLS GSKTLNPRLV TLVEEELRPI  360
GDEEGFVGRF MDTLHHYSAL YDSLEAGFPL QSRARALVER VFLGPRITGS LARMYRARGE  420
EERCSWGEWL SGVGFCESNI SFANHCQAKL LLGLFNDGYR MEEIGTNKLV LGWKSRRLLS  480
ASIWTTMDID L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-58944857378Protein SCARECROW
5b3h_D2e-58944857378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057273.10.0nodulation-signaling pathway 2 protein isoform X1
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A3Q7ITG80.0A0A3Q7ITG8_SOLLC; Uncharacterized protein
STRINGSolyc11g013150.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-154GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]