PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g005520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 266aa    MW: 29760.3 Da    PI: 9.3759
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g005520.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.2e-1676127155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Sopen11g005520.1  76 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 127
                       57****************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.838141IPR001471AP2/ERF domain
SMARTSM003803.1E-6247IPR001471AP2/ERF domain
CDDcd000181.69E-11243No hitNo description
SuperFamilySSF541712.62E-10442IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-10542IPR001471AP2/ERF domain
CDDcd000181.01E-1176135No hitNo description
PfamPF008471.7E-1076127IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-1876136IPR016177DNA-binding domain
PROSITE profilePS5103219.15177135IPR001471AP2/ERF domain
SMARTSM003801.6E-3177141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1877135IPR001471AP2/ERF domain
PRINTSPR003679.8E-57889IPR001471AP2/ERF domain
PRINTSPR003679.8E-5117137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MKWRDRSTVY LGGYDKEDKA ARAYDLAALK YWGPTATTNF PVTNYTKELE EMKHMTKQEF  60
IASLRRRSSG FSRGASIYRG VTRHHQQGRW QARIGRVAGN KDLYLGTFAT EEEAAEAYDI  120
AAIKFRGVNA VTNFEMNRYD VEAIMKSSLP VGGTAKRLKL SLESEQKSSS SNNNNNHQQQ  180
QQQQQMTQCN SSNNINFGAM PPVSAIPCGV PFDNTAPAFY HHNFFQYLHP GNASVPDASN  240
ATTTMAAAMP LLPSAADLFI WPHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058903.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ6J9N82e-99AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A3Q7IQW91e-161A0A3Q7IQW9_SOLLC; Uncharacterized protein
STRINGSolyc11g010710.1.11e-162(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.14e-80AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]