PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g004350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 592aa    MW: 65154.3 Da    PI: 6.8806
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g004350.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.5e-15177236155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Sopen11g004350.1 177 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 236
                       57*******************666664478446*************************98 PP

2AP2476.4e-15279330155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Sopen11g004350.1 279 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 330
                       57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-17177246IPR016177DNA-binding domain
CDDcd000185.52E-23177246No hitNo description
PfamPF008474.7E-12177236IPR001471AP2/ERF domain
PROSITE profilePS5103219.23178244IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-16178245IPR001471AP2/ERF domain
SMARTSM003801.2E-29178250IPR001471AP2/ERF domain
PRINTSPR003675.5E-6179190IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-17279339IPR016177DNA-binding domain
CDDcd000182.73E-25279340No hitNo description
PfamPF008478.0E-10279330IPR001471AP2/ERF domain
PROSITE profilePS5103219.177280338IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-18280338IPR001471AP2/ERF domain
SMARTSM003802.7E-33280344IPR001471AP2/ERF domain
PRINTSPR003675.5E-6320340IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MSMLMGNSCN SQHLENNQEP PKLENFLGIG EQKLQQVCNN NNNNNNNDYN IYCSTPNNIS  60
DNNANNIIGL SMIKNWLRNN PNSTTTTTTT TPSLLQDDKK EGDVVGVAGG GGNGNNAQSL  120
SLSMSTGGDG GGGGGGDNSC SPENNKQEIV SGNNDGQISG AIVVPKKSID TFGQRTSIYR  180
GVTRHRWTGR YEAHLWDNSC RREGQTRKGR QVYLGGYDKE EKAARAYDLA ALKYWGPTTT  240
TNFPISNYEK ELEEMKHMTR QEYVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV  300
AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFEIN RYDVKSILES STLPIGGAAK  360
RLKDVEQAEI ALDYQRASQE NIGTTHLMNG SMSAYGAGHC WPNITLQQTQ PLSAMHYSNP  420
YNSQQRLWCK QEVQDHDLTS QNFQDFHSLQ LGNAHNYLMG LDNSSSSSME QNNVTYHQGV  480
GYASNNNNHH GGGGFVLPHL NGSSSYGGEN DNEVKQLQLG THENIFGNYY HSQSATSNDS  540
IKVSNTLYDH QESACNSNNW MSTAVPMALA SRTSTVAVCH GVAPTFTMWN DS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057921.20.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ8LSN21e-137BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A3Q7JIJ20.0A0A3Q7JIJ2_SOLLC; Uncharacterized protein
STRINGSolyc11g008560.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-133AP2 family protein