PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g035750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 539aa    MW: 59570.5 Da    PI: 5.0148
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g035750.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.21.4e-961675341374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                       lv+ +++cA+a +++   la++l+ ++  +  +++ g +m+++a++f+ A  ++++r        l p  ++    +     ++ f+  + +l
  Sopen10g035750.1 167 LVNIIVACAKADKKNYSCLADRLIRNIIRRfeVAQFGGAMKKVATHFADAFDNKIHR--------LIP--QD---IVGLSYNHTSFYGNCLFL 246
                       578899*******************99888789999*********************........222..22...3344444455******** PP

              GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                       kf+h+taNq Ilea+++ +rvH+iDf+ +qGlQW aLlqaLa Rp+gpp +R+ g++ +  +   ++ l+e+g +La+fAe++gv+fef  ++
  Sopen10g035750.1 247 KFAHFTANQSILEAFANFNRVHVIDFSFNQGLQWQALLQALALRPGGPPAFRLSGISVQPMSddGSDPLQEVGFKLAQFAESIGVEFEFCGFM 339
                       ********************************************************9854446799**************************9 PP

              GRAS 183 akrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.e 272
                       a +l+dle ++L+++p  +Ea+aVn+v++l+ l++ ++++e+    v++l+k+++Pk+v+++eqe++hn+  F  r++ea +yys++fd l +
  Sopen10g035750.1 340 AYALADLEASMLNIRPsnEEAVAVNSVFELQPLFSIPGAIEK----VMDLIKQIEPKIVTITEQEVNHNGRVFSSRIIEASRYYSTMFDFLeN 428
                       99*************999****************77777777....*********************************************44 PP

              GRAS 273 aklpreseerikvErellg...reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                        +  + ++ ++++E+++l     ei n+vaceg++r+ r  tl++W  r+ +aGF+ vpl+++++kq  +ll+ ++  +gy+ve ++gsl+l 
  Sopen10g035750.1 429 LESISPNNLDTVMEKQCLDvmvSEIYNLVACEGTKRIVRSGTLGQWLVRIYSAGFNLVPLTSNTYKQGAMLLASFPnAEGYKVEVKDGSLMLS 521
                       4445566899999*9986433389********************************************************************* PP

              GRAS 362 WkdrpLvsvSaWr 374
                       W++ pL++ S Wr
  Sopen10g035750.1 522 WNSLPLIANSTWR 534
                       ************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.538141513IPR005202Transcription factor GRAS
PfamPF035144.8E-94167534IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MSSREISMDT IMEDEDSFVS NTNAIIYAAS DISGWTHSLF SDNNIPNSSS STSVDEHHQQ  60
ISTAAGGGGK EDDSMTVSSS ASSSWFNNNK QIDDHQEIRI FNVDFRSLCN NTCSGFESRG  120
GLLPDTGRTV NGDASVLLVN IIVACAKADK KNYSCLADRL IRNIVLLVNI IVACAKADKK  180
NYSCLADRLI RNIIRRFEVA QFGGAMKKVA THFADAFDNK IHRLIPQDIV GLSYNHTSFY  240
GNCLFLKFAH FTANQSILEA FANFNRVHVI DFSFNQGLQW QALLQALALR PGGPPAFRLS  300
GISVQPMSDD GSDPLQEVGF KLAQFAESIG VEFEFCGFMA YALADLEASM LNIRPSNEEA  360
VAVNSVFELQ PLFSIPGAIE KVMDLIKQIE PKIVTITEQE VNHNGRVFSS RIIEASRYYS  420
TMFDFLENLE SISPNNLDTV MEKQCLDVMV SEIYNLVACE GTKRIVRSGT LGQWLVRIYS  480
AGFNLVPLTS NTYKQGAMLL ASFPNAEGYK VEVKDGSLML SWNSLPLIAN STWRLCSQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5017453326378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767873.10.0DELLA protein GAI-like
SwissprotQ7Y1B61e-132GAI_SOLLC; DELLA protein GAI
TrEMBLA0A3Q7IN050.0A0A3Q7IN05_SOLLC; Uncharacterized protein
STRINGSolyc10g086370.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128641119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-105GRAS family protein
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]