PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g028030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 148aa    MW: 16346.2 Da    PI: 6.5266
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g028030.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.91.9e-211270155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpse...ng..krkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++y+GVr++  +g+WvAeIr+p     ++  k kr +lg+f+ta+eAa a+++a+k ++g
  Sopen10g028030.1 12 CKYRGVRQRT-WGKWVAEIREPAYisgDNksKGKRLWLGSFDTADEAAIAYDEAAKVMYG 70
                      79*****999.**********655665335556***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-151270IPR001471AP2/ERF domain
CDDcd000189.40E-331280No hitNo description
SMARTSM003803.0E-371384IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-301379IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-211379IPR016177DNA-binding domain
PROSITE profilePS5103222.8661378IPR001471AP2/ERF domain
PRINTSPR003671.5E-101425IPR001471AP2/ERF domain
PRINTSPR003671.5E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MQGKGGPENS SCKYRGVRQR TWGKWVAEIR EPAYISGDNK SKGKRLWLGS FDTADEAAIA  60
YDEAAKVMYG SNATLNFPNH SSNGSITRTS SLELSGQSCV DHEDLVLDGS KNVEIESDLK  120
TSDTPNTDLS YELIMVRLLV PGLKRTWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-20285379Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767967.12e-92LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERN3-like
SwissprotA2WL193e-32DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLA0A3Q7IIY01e-89A0A3Q7IIY0_SOLLC; Uncharacterized protein
STRINGSolyc10g076380.1.13e-89(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.11e-26ERF family protein