PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g023850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 158aa    MW: 18008 Da    PI: 6.8086
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g023850.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.73.8e-112887361
                      XXCH.HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  3 elkr.errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61
                      +l+r  +++++NRe+ArrsR RK++ ++ L     +L +eN +   +++  ++++ + ++
  Sopen10g023850.1 28 DLQRkRKKMISNRESARRSRMRKQKHLDDLMSQLSNLMKENNEILTNMSVTTQNYLNIEA 87
                      4554056788*******************************9888777776666666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-142791IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4732992IPR004827Basic-leucine zipper domain
PfamPF001702.0E-83072IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-931103No hitNo description
SuperFamilySSF579592.41E-113183No hitNo description
CDDcd147021.97E-153282No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MASSSGTSSG SGSGSGSYIL LNSGSEEDLQ RKRKKMISNR ESARRSRMRK QKHLDDLMSQ  60
LSNLMKENNE ILTNMSVTTQ NYLNIEAENS ILRAQVSELR QRFESLTKIT SVSSYNGNIN  120
EISNDQIFHE SYLADAFTQN ESWNFMYHPI MTADIMQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13034RKRKK
23051RKRKKMISNRESARRSRMRKQK
34350RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782351.13e-55PREDICTED: ocs element-binding factor 1-like
RefseqXP_016471889.13e-55PREDICTED: bZIP transcription factor 53-like
TrEMBLK4D0Z91e-88K4D0Z9_SOLLC; Uncharacterized protein
STRINGSolyc10g054010.1.14e-88(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.15e-36basic leucine-zipper 44