PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g022600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 128aa    MW: 14347.1 Da    PI: 10.7892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g022600.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.25.6e-152870955
               AP2  9 dkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      + + g+W+AeIrdp+    r +r++lg+f tae+Aa+a+++a+ +++g
  Sopen10g022600.1 28 R-SLGKWAAEIRDPR----RaARVWLGTFTTAEDAARAYDKAAIEFRG 70
                      4.48*********82....48************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.086678IPR001471AP2/ERF domain
SMARTSM003805.5E-242684IPR001471AP2/ERF domain
CDDcd000181.36E-212877No hitNo description
SuperFamilySSF541712.94E-172878IPR016177DNA-binding domain
PfamPF008472.1E-82870IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-242878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MVVYDATAGV NNNNTLNFVA KKKKNNYRSL GKWAAEIRDP RRAARVWLGT FTTAEDAARA  60
YDKAAIEFRG TRAKLNFSFA DYTSIQQHNT TTTTTPMQVT TIISALAVTT SNEHRRRRVV  120
GSIDEFGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-162879961ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-1628791264ATERF1
3gcc_A4e-1628791264ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767986.14e-90ethylene-responsive transcription factor ERF109-like
TrEMBLM1AEW83e-39M1AEW8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000213125e-40(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-16redox responsive transcription factor 1