PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen10g004890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 211aa    MW: 23127 Da    PI: 8.9179
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen10g004890.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-201463255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a+++a+++++g
  Sopen10g004890.1 14 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDNAAREFRG 63
                      6********.**********8...557************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-401477IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-331472IPR001471AP2/ERF domain
PROSITE profilePS5103224.0391471IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-221472IPR016177DNA-binding domain
PfamPF008476.0E-141463IPR001471AP2/ERF domain
CDDcd000189.18E-341471No hitNo description
PRINTSPR003671.3E-111526IPR001471AP2/ERF domain
PRINTSPR003671.3E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAMVNLNGIS KEVHYRGVRK RPWGRYAAEI RDPGKKSRVW LGTFDTAEEA ARAYDNAARE  60
FRGVKAKTNF PQLEKEKEED LKFAVKNEIN RSPSQTSTVE SSSPVMVDSS SPLDLSLCGS  120
IGGFNHHTVK FPSSGGGFTG SVPAVNHMYY IEALARAGVI NLETNRKKTV DYLGGGGYSD  180
SSTVIDFMRV DVKSTTAGLN LDLNFPPPEN M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-221471260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089534.11e-157ethylene-responsive transcription factor 4-like
RefseqXP_015089545.11e-157ethylene-responsive transcription factor 4-like
TrEMBLA0A3Q7ICU71e-147A0A3Q7ICU7_SOLLC; Uncharacterized protein
STRINGSolyc10g009110.1.11e-148(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-26erf domain protein 9