PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g032850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 133aa    MW: 14937.4 Da    PI: 6.5375
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g032850.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.3e-201970256
               AP2  2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56
                      +y+GVr+++ +g+++AeIrd       + +r++lg+f taeeAa+a+++a+ +++g+
  Sopen09g032850.1 19 KYRGVRRRP-WGKFAAEIRD----SarQGARVWLGTFNTAEEAARAYDRAAYSMRGH 70
                      8********.**********....33334**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-231978IPR016177DNA-binding domain
PfamPF008471.6E-151970IPR001471AP2/ERF domain
SMARTSM003801.1E-331983IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-311979IPR001471AP2/ERF domain
PROSITE profilePS5103223.7491977IPR001471AP2/ERF domain
CDDcd000181.24E-181978No hitNo description
PRINTSPR003678.7E-122031IPR001471AP2/ERF domain
PRINTSPR003678.7E-124359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MEQDPSNGRR TNGGGGEIKY RGVRRRPWGK FAAEIRDSAR QGARVWLGTF NTAEEAARAY  60
DRAAYSMRGH LAILNFPEEY NLPSSSSHFY SAGSMASSSS SSSSSRQVLE FEYLDDKLLE  120
ELLDCDEETN KRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-391913314129Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087543.13e-94ethylene-responsive transcription factor ERF096
SwissprotQ9LTC53e-43ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G9I9T07e-59A0A2G9I9T0_9LAMI; Uncharacterized protein
STRINGSolyc09g089910.1.16e-58(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-25ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]