PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g028180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 503aa    MW: 56356.6 Da    PI: 6.2258
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g028180.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.11.4e-1061434981374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                       l++lLle A avs ++l +a+++L +l ++asp+g +  +R++ayf++A+a+r+ +s+ ++++ l   +t       + +al++f+++sP++k
  Sopen09g028180.1 143 LITLLLEGAVAVSVDNLGEAHRVLLELTQMASPYGpSCAERVVAYFAKAMASRVISSWLGICSPLINYKT-------VHTALQAFNNISPFIK 228
                       5789*******************************9999***********************87755444.......4568899********* PP

              GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                       f+h+t NqaIlea+++ +rvHiiD di+qGlQWpaL++ La+R egpp++ +Tg+g     s e l etg++L++fA++lg++fef++ ++ +
  Sopen09g028180.1 229 FAHFTSNQAILEAFHRRDRVHIIDVDIMQGLQWPALFHILATRMEGPPHVTMTGIGT----SMELLIETGKQLSNFAKRLGMSFEFHP-IVGK 316
                       *********************************************************....***************************.6899 PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                         +++++++++++gEa+a+++v   h+l+d +++  +    +++l+++lsP+vv++veqe+ + ++sFl+rf+ +l+yys++fdsl a l ++
  Sopen09g028180.1 317 AGEIDISTFKISRGEAIAIHWVQ--HSLYDATGPDWK----TMRLLQQLSPRVVTLVEQEIAL-GGSFLDRFVGSLHYYSTIFDSLGAFLESD 402
                       99********************9..99*999999888....**********************.789************************** PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370
                       ++ r++vE+ ll rei n++a  g +r+ +  ++++Wr+ l++ GF +vp+s++ ++qa+l+l++++  +gy++ + +g+l lgWkd +L+++
  Sopen09g028180.1 403 DSSRHSVEHGLLYREINNILAIGGPARNGE-DKFRHWRSELSKNGFIQVPMSTNSMAQAQLILNMFPpAHGYSLVQGDGTLRLGWKDTSLFTA 494
                       **************************7665.55************************************************************ PP

              GRAS 371 SaWr 374
                       SaW+
  Sopen09g028180.1 495 SAWT 498
                       ***6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.077117477IPR005202Transcription factor GRAS
PfamPF035144.9E-104143498IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MMKGESELIH QHTPLDQPNE QWDYCSPNHP SKTLITENRA NNPDQRNELS QWVEQVTRQL  60
LIEDLPENEF SDTDTTTYHV SALLGELRPN KIARRDSNSE GIGGHQQQQQ HEWNSTTHDD  120
HHIARDEMGV KGMSGLDDQG LNLITLLLEG AVAVSVDNLG EAHRVLLELT QMASPYGPSC  180
AERVVAYFAK AMASRVISSW LGICSPLINY KTVHTALQAF NNISPFIKFA HFTSNQAILE  240
AFHRRDRVHI IDVDIMQGLQ WPALFHILAT RMEGPPHVTM TGIGTSMELL IETGKQLSNF  300
AKRLGMSFEF HPIVGKAGEI DISTFKISRG EAIAIHWVQH SLYDATGPDW KTMRLLQQLS  360
PRVVTLVEQE IALGGSFLDR FVGSLHYYST IFDSLGAFLE SDDSSRHSVE HGLLYREINN  420
ILAIGGPARN GEDKFRHWRS ELSKNGFIQV PMSTNSMAQA QLILNMFPPA HGYSLVQGDG  480
TLRLGWKDTS LFTASAWTSP NSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-13913749813379Protein SCARECROW
5b3h_A1e-13913749812378Protein SCARECROW
5b3h_D1e-13913749812378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087179.10.0protein SCARECROW-like
SwissprotQ9AVK41e-136SCR_PEA; Protein SCARECROW
TrEMBLA0A3Q7I4H10.0A0A3Q7I4H1_SOLLC; Uncharacterized protein
STRINGSolyc09g066450.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122912023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-138GRAS family protein