PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g028070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 193aa    MW: 22304 Da    PI: 4.787
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g028070.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-1965115255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ +++g
  Sopen09g028070.1  65 NYRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDNAEEAALAYDQAAFAMRG 115
                       59*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.80E-3064124No hitNo description
PfamPF008472.3E-1365115IPR001471AP2/ERF domain
PROSITE profilePS5103222.66965123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-3165124IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-2365125IPR016177DNA-binding domain
SMARTSM003805.7E-3765129IPR001471AP2/ERF domain
PRINTSPR003671.2E-106677IPR001471AP2/ERF domain
PRINTSPR003671.2E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDYSSWDDLL FHYNSLPFNV NDTEDMLLFN LVAEGSSQET VNSSSSYGIK EEEVTSYEEE  60
RKDKNYRGVR KRPWGKYAAE IRDSTRNGVR VWLGTFDNAE EAALAYDQAA FAMRGSMAIL  120
NFPVEIVKES LNEMKCRFDG NCSPVIELKK RYSMRRKSVS RKNRARKDVV VFEDLGAEYL  180
EELLISSESI TNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-3062126266ATERF1
3gcc_A4e-3062126266ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160167RKNRARKD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087506.11e-141ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y91e-140ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLM1ANG61e-117M1ANG6_SOLTU; Uncharacterized protein
STRINGSolyc09g066360.1.11e-138(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-51ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]