PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g028040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 132aa    MW: 14989.6 Da    PI: 7.5004
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g028040.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-191969255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr ++ +g+++AeIrd ++ng  +r +lg++ tae+Aaka+++a+ +++g
  Sopen09g028040.1 19 KYRGVRKRP-WGKYAAEIRDTNKNG--ARRWLGTYATAEDAAKAYDKAAFEMRG 69
                      8********.**********65676..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-351983IPR001471AP2/ERF domain
PfamPF008471.6E-121969IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-301979IPR001471AP2/ERF domain
PROSITE profilePS5103223.3671977IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-221979IPR016177DNA-binding domain
CDDcd000184.80E-191978No hitNo description
PRINTSPR003676.4E-132031IPR001471AP2/ERF domain
PRINTSPR003676.4E-135979IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MNEDNSNIKK KESCVGEVKY RGVRKRPWGK YAAEIRDTNK NGARRWLGTY ATAEDAAKAY  60
DKAAFEMRGR FAVLNFPHEY PSDHHSSSSS YSMSSSSTSC SSVKEVIEIE YLDDKLLEEL  120
LGMESDKSQF NK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-311911614114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087595.17e-95ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC51e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3Q7I4E64e-61A0A3Q7I4E6_SOLLC; Uncharacterized protein
STRINGSolyc09g066340.1.17e-62(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-21ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]