PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g011650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 500aa    MW: 57855.1 Da    PI: 5.0596
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g011650.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS154.31.1e-471354993373
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       +lL    ea+++g++ela+ ++  ++   +p g++++R+a+ + +  ++  ++         +  ++++   +   aa+k+f++++P  kf+h
  Sopen09g011650.1 135 HLLSVYGEAMENGHKELAEVIIRCIKGKINPLGESLERVASNLFQHTEEEDQE---------SYLKQES--NKIIEAAFKAFYQIFPSGKFAH 216
                       677777899******************************98755544433333.........1222222..2334458899************ PP

              GRAS  96 ltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rl 186
                       ++aN+aI ea+  e ++ HiiD+d+++G+QWp++++a++++      lR+T +++ +++++ + eet++rL ++A+ +g++++ + ++ +   
  Sopen09g011650.1 217 FAANSAIIEAMPDEsQTTHIIDYDMGKGIQWPPIIEAMSQK---RKILRLTSIKK-STSDHWRFEETKRRLVDYANLFGLTLQVDEMTFEeLA 305
                       ***********9997888*********************97...457********.66799************************98555133 PP

              GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl.......sPkvvvvveqeadhnse.....sFlerflealeyysal 267
                       ++l+  + r k+ E l+ n+++q  ++ ++   ++    e+Lkl k+l          +v++ + ea  ns+     +F   f + l +y ++
  Sopen09g011650.1 306 SELRRMKKRGKRSEWLVFNCMFQFSYMGKRIRRIDA--LEFLKLAKELllansstHRGLVTFGDGEAMDNSHhntnnTFSSYFNKNLLHYQSI 396
                       445555556666***************966666655..566666665433322116779*****99766655555569*************** PP

              GRAS 268 fdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesg 356
                       f+sle  +p++  ++r  +E  +l++++++    ++ e      ++ + ++  +e+G++ +++s+++  qak ++++ +   ++v    e+++
  Sopen09g011650.1 397 FESLELYFPSHLaQARLAMESLFLAPQVCSFSWFQNWE------EMTNVSDSCSEMGLQGMRISKENLLQAKEVVNERETP-FKVRieeERQH 482
                       ********99877***************9987777776......56677899*************************9944.65544467799 PP

              GRAS 357 slvlgWkdrpLvsvSaW 373
                       ++vl Wk+ ++v vS W
  Sopen09g011650.1 483 EMVLEWKGISIVRVSTW 499
                       ***************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.384107478IPR005202Transcription factor GRAS
PfamPF035143.8E-45135499IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MIQSEILHNS WSSNNQIHPF YEYQNHVISN YSSLNSKDQD PSEISLSDFT SLFSDDVLND  60
LPMDDIEFVD VSRWLNDSEN EGNENTKITS ETKKDGDSCS PALSSISIDT STTIQSRNDV  120
ISQSREIDNQ MRIHHLLSVY GEAMENGHKE LAEVIIRCIK GKINPLGESL ERVASNLFQH  180
TEEEDQESYL KQESNKIIEA AFKAFYQIFP SGKFAHFAAN SAIIEAMPDE SQTTHIIDYD  240
MGKGIQWPPI IEAMSQKRKI LRLTSIKKST SDHWRFEETK RRLVDYANLF GLTLQVDEMT  300
FEELASELRR MKKRGKRSEW LVFNCMFQFS YMGKRIRRID ALEFLKLAKE LLLANSSTHR  360
GLVTFGDGEA MDNSHHNTNN TFSSYFNKNL LHYQSIFESL ELYFPSHLAQ ARLAMESLFL  420
APQVCSFSWF QNWEEMTNVS DSCSEMGLQG MRISKENLLQ AKEVVNERET PFKVRIEEER  480
QHEMVLEWKG ISIVRVSTWM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308316RRMKKRGKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087364.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A3Q7I1V40.0A0A3Q7I1V4_SOLLC; Uncharacterized protein
STRINGSolyc09g018460.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.16e-20GRAS family protein