PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g002130.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 454aa    MW: 49791.4 Da    PI: 7.0777
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g002130.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-17141190155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sopen09g002130.2 141 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 190
                       78*******************......55************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-9141190IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-16141200IPR016177DNA-binding domain
SMARTSM003809.6E-32142204IPR001471AP2/ERF domain
PROSITE profilePS5103217.82142198IPR001471AP2/ERF domain
CDDcd000188.49E-12142200No hitNo description
Gene3DG3DSA:3.30.730.104.2E-17142199IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-6233278IPR016177DNA-binding domain
CDDcd000183.92E-13233278No hitNo description
SMARTSM003807.7E-13234282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MFDLNLCFEE DAMETVTTSG KLKELSFGQI ENSGTSNSSI VNVETSSTAG DDEFISCSDQ  60
RTDGYAFEIL RADYEVNGFV TKELFPLTGG ESAATPSQQQ QWLDLSGNYG GVPMEQRIVI  120
GPPQLRQQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA  180
YDRAAIKFRG LDADINFNVS DYHDDLKQMG NFSKEEFVHI LRRQSTGFSR GSSKYRGVTL  240
HKCGRWEARM GQFLGKKAYD KAAIKCNGRE AVTNFELSTY EGELSTEAEN GGADHNLDLN  300
LGIAPSVLAD DQGGNTCQMV NYVVQCASNG LPGYTGAMNI PTTTMGGKLL HGHQLLTDRP  360
LLWNGVNTSI FPTLKGTALG KGIEVDSSPN WTRQDQHPYG GSPSVPLFST AASSGFANST  420
TAAAQLPRFS TGKLPYQHSP SLANMNFAHY YCKS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM2468790.0FM246879.2 Solanum tuberosum subsp. andigena mRNA for relative to APETALA2 1 (rap1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086400.10.0ethylene-responsive transcription factor RAP2-7-like
RefseqXP_015086406.10.0ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9SK031e-93RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A3Q7HXZ30.0A0A3Q7HXZ3_SOLLC; Uncharacterized protein
STRINGSolyc09g007260.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.12e-95related to AP2.7