PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g002130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 469aa    MW: 51533.3 Da    PI: 6.7324
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g002130.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.3e-17141190155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sopen09g002130.1 141 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 190
                       78*******************......55************************998 PP

2AP242.12.1e-13233283155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Sopen09g002130.1 233 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 283
                       89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-9141190IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-16141200IPR016177DNA-binding domain
SMARTSM003809.6E-32142204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-17142199IPR001471AP2/ERF domain
PROSITE profilePS5103217.82142198IPR001471AP2/ERF domain
CDDcd000188.66E-12142200No hitNo description
PfamPF008475.0E-9233283IPR001471AP2/ERF domain
CDDcd000182.20E-25233293No hitNo description
SuperFamilySSF541718.5E-17233293IPR016177DNA-binding domain
SMARTSM003802.1E-31234297IPR001471AP2/ERF domain
PROSITE profilePS5103215.514234291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-16234292IPR001471AP2/ERF domain
PRINTSPR003674.6E-6235246IPR001471AP2/ERF domain
PRINTSPR003674.6E-6273293IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MFDLNLCFEE DAMETVTTSG KLKELSFGQI ENSGTSNSSI VNVETSSTAG DDEFISCSDQ  60
RTDGYAFEIL RADYEVNGFV TKELFPLTGG ESAATPSQQQ QWLDLSGNYG GVPMEQRIVI  120
GPPQLRQQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA  180
YDRAAIKFRG LDADINFNVS DYHDDLKQMG NFSKEEFVHI LRRQSTGFSR GSSKYRGVTL  240
HKCGRWEARM GQFLGKKYIY LGLFDSEIEA ARAYDKAAIK CNGREAVTNF ELSTYEGELS  300
TEAENGGADH NLDLNLGIAP SVLADDQGGN TCQMVNYVVQ CASNGLPGYT GAMNIPTTTM  360
GGKLLHGHQL LTDRPLLWNG VNTSIFPTLK GTALGKGIEV DSSPNWTRQD QHPYGGSPSV  420
PLFSTAASSG FANSTTAAAQ LPRFSTGKLP YQHSPSLANM NFAHYYCKS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM2468790.0FM246879.2 Solanum tuberosum subsp. andigena mRNA for relative to APETALA2 1 (rap1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086400.10.0ethylene-responsive transcription factor RAP2-7-like
RefseqXP_015086406.10.0ethylene-responsive transcription factor RAP2-7-like
SwissprotB8AXC31e-101AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A3Q7HXZ30.0A0A3Q7HXZ3_SOLLC; Uncharacterized protein
STRINGSolyc09g007260.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-107related to AP2.7