PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g029960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 645aa    MW: 72570.9 Da    PI: 7.8084
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g029960.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2331.5e-103783555
               AP2  5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                      G+r+ k +gr++A I d    + ++k+++lg+f+t eeA +a+   + ++e+
  Sopen08g029960.1 37 GIRRQK-NGRYAAVITD----QiRHKKVWLGTFDTVEEASQAYFSKKSEFEN 83
                      999887.8*********....4345******************988888776 PP

2AP228.15.1e-09218261754
               AP2   7 rwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                       r + k+gr++A I d +     + kr++lg+f+t eeA +a+   + ++e
  Sopen08g029960.1 218 R-RQKNGRYAAVITDpF-----ThKRVRLGTFDTVEEASQAYFYKKSEFE 261
                       3.5669*********55.....46******************87776665 PP

3AP2285.5e-09447490955
               AP2   9 dkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        k++gr+ ++I  p     + k+++lg+f++aeeA  a+   r+++++
  Sopen08g029960.1 447 SKTTGRYTSQITNPI----TkKKIWLGTFDSAEEASHAYQSKRLEFHK 490
                       5899******99972....36**********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.7593493IPR001471AP2/ERF domain
PfamPF008471.7E-63684IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-93681IPR016177DNA-binding domain
CDDcd000187.73E-113774No hitNo description
SMARTSM003800.0013788IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-103776IPR001471AP2/ERF domain
PROSITE profilePS5103211.416213270IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-9215260IPR016177DNA-binding domain
CDDcd000186.26E-11216253No hitNo description
SMARTSM003800.0056216267IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-8216253IPR001471AP2/ERF domain
PROSITE profilePS5103210.507340400IPR001471AP2/ERF domain
SMARTSM003805.8E-4340406IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-9342384IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.1E-9343380IPR001471AP2/ERF domain
PROSITE profilePS5103211.561440503IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-9442490IPR016177DNA-binding domain
SMARTSM003800.014448495IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-10448489IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MDSKKLVVNV NQGETLEYDE CNISKNCKPK ENVSLIGIRR QKNGRYAAVI TDQIRHKKVW  60
LGTFDTVEEA SQAYFSKKSE FENEKLRNQG NKKSKRKRET RSIVEVYKRG KYYSEKSEEL  120
VNVKQGNENV NGEVCHMEST WESEIDVVIS SSFNGGTEQR IDSHEIGSVE EVFRIAKEES  180
RVFNLGLMAN VCGTKSSDDY NNTTSCNPKV KVSLIGARRQ KNGRYAAVIT DPFTHKRVRL  240
GTFDTVEEAS QAYFYKKSEF EKLSQQGNQQ NILKKNCDHI QQLESSFVVA SLDTAASESG  300
IAKRINSQGE EPKSSKATSC VESSDECCIT TSCDPKARIS ITGIRRQKNG RYAAVITDPI  360
KHKKVCLGTF DSIEKASHAY WSKKSEFKIL RQQGDAKNNQ KKNYDKIQQP ESPFVVASLD  420
TTACDSGSAK RIGSHKTTTH LIGAYSSKTT GRYTSQITNP ITKKKIWLGT FDSAEEASHA  480
YQSKRLEFHK LIEAKQQQCT NKLRNSEKSV SVRQGHENVN CEPFHPESAS GSPDIDVLFS  540
NLSNEETIRS INSYQSNKFD LLSSKEVELQ SNMLTESTAG EKQEGQEDDG DLWKGEWVQL  600
PGDNRAAMFS LILGLPIIDN YGYLLGEFST LDDLSIYKTE DDNHQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027775191.10.0uncharacterized protein LOC114078472
TrEMBLM1AW580.0M1AW58_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000317440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-11ERF family protein