PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g029950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 864aa    MW: 97245.1 Da    PI: 7.138
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g029950.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2316.5e-10125164548
               AP2   5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 
                       GVr+ k +gr+ A I d    + ++k+++lg+f+t eeA +a+  
  Sopen08g029950.1 125 GVRRQK-NGRYGAVITD----QiRHKQVWLGTFDTVEEASQAYFS 164
                       9**888.8*********....4345*****************965 PP

2AP2347.1e-11281328556
               AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       GVr+ k +gr+ A I d s   k+k+++lg+f+t eeA +a+   + +le+e
  Sopen08g029950.1 281 GVRRQK-NGRYGAVITDTS---KHKQVWLGTFDTVEEASQAYFSKKSELENE 328
                       9**888.8*********43...35******************9999999886 PP

3AP232.71.9e-10545591454
               AP2   4 kGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 
                        G+r+ k +gr+ A I d      k+kr++lg+f+t eeA +a+   + +le
  Sopen08g029950.1 545 VGIRRQK-KGRYGAVITD----RiKHKRVWLGTFDTVEEASQAYLSKKSELE 591
                       5999888.7*********....4446******************98887776 PP

4AP233.79.1e-11653697653
               AP2   6 VrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                       V+ +k +g++ +eIr p    ++ kr++lg+fgtaeeA +a+   ++++
  Sopen08g029950.1 653 VHKRKDSGKYTSEIRNP----ISkKRIWLGTFGTAEEAFQAYQSKKLEF 697
                       8899************7....246******************8777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.904122182IPR001471AP2/ERF domain
PfamPF008471.3E-5124169IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-9124166IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-10125162IPR001471AP2/ERF domain
CDDcd000189.55E-12125162No hitNo description
SMARTSM003801.8E-4125188IPR001471AP2/ERF domain
SMARTSM003802.9E-5278335IPR001471AP2/ERF domain
PROSITE profilePS5103211.825278340IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-9280325IPR016177DNA-binding domain
PfamPF008472.9E-6281328IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-10281320IPR001471AP2/ERF domain
CDDcd000181.01E-12281318No hitNo description
SMARTSM003809.8E-5543602IPR001471AP2/ERF domain
PROSITE profilePS5103212.167543600IPR001471AP2/ERF domain
PfamPF008472.0E-6545591IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-9545589IPR016177DNA-binding domain
CDDcd000183.56E-12545583No hitNo description
Gene3DG3DSA:3.30.730.103.2E-10546583IPR001471AP2/ERF domain
PROSITE profilePS5103213.445649711IPR001471AP2/ERF domain
SMARTSM003801.3E-4650704IPR001471AP2/ERF domain
PfamPF008476.9E-5653698IPR001471AP2/ERF domain
CDDcd000185.23E-11653690No hitNo description
Gene3DG3DSA:3.30.730.102.6E-12653697IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-9653697IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    Send to blast
METDQEGLLA EEEEGKSSSK KQKMTQIEQL EIFVDKVKSA IPLQHTNHKA QSNKQETDGE  60
MPLFVNEWQM REKGAFLGTD EELKGFSFNM HKFQGKEPFM HKSCLMSNVH GDTESSNKAK  120
ISLIGVRRQK NGRYGAVITD QIRHKQVWLG TFDTVEEASQ AYFSKKSEFE MLRQQGNKDN  180
KPKENSDQIQ LPESPVVLSS MSVANDQTLD SASVGCRNRR IDSHERTPHI VEVHKNKMSG  240
EVSESSKETQ CLMGSVVQNT ESFDECSTST SNFEAKISLL GVRRQKNGRY GAVITDTSKH  300
KQVWLGTFDT VEEASQAYFS KKSELENEKL SQQHNKDNRP KKNYGQIQQP ESPVVHASLS  360
VEGVQTLDTA SVGMRIGRID FHGTTHVVEV HKSKTSEKDP EFSKDASCLM GSVHATESSD  420
QCNTSTGNPK AKINLIGVRR QKNGRYGAVI TDTTRHKQPE SLVESLSINN DQTLNAASGG  480
RRNKRIDSHK ATPDIVGVHK NKTSEKELES SRETTHLMDN VHGTESCDEC NTTTSCDPKA  540
KVSLVGIRRQ KKGRYGAVIT DRIKHKRVWL GTFDTVEEAS QAYLSKKSEL ERLGQQGNKE  600
NKLKDCDQVQ QPESPVVPSV SVANHDQTLN TARVRRRNDK IDSHKTVTRF FRVHKRKDSG  660
KYTSEIRNPI SKKRIWLGTF GTAEEAFQAY QSKKLEFERL VHAKRQRGNE QTHSTQDEKS  720
EKLVNVESGH INVNRELESA GGSDINVPIS DSSNGGNEER IDSHEIGTAE EAFYTYQYKK  780
FDLLSSKEVE LQSYMPTDSS AGEKQEDDEN LWKGEWMQLP GDNRAVKFSL KLGLPIIDNY  840
GSLLGEFSTL DDLSMCKTDY DNET
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566296.10.0PREDICTED: uncharacterized protein LOC107864446
TrEMBLA0A3Q7HWF60.0A0A3Q7HWF6_SOLLC; Uncharacterized protein
STRINGSolyc08g081650.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-13ERF family protein