PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g028510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 377aa    MW: 40459.4 Da    PI: 8.7263
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g028510.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.41.5e-35701732104
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaks 93 
                       ++++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+++i+e+tgt++ +a ++  +++ +  +s++ s+ +  +
  Sopen08g028510.1  70 PPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQSIIEATGTGTVPAIAVsVNGTLKIPTSSPASNPEIDE 162
                       789*************************************************************77777444322222222222222222222 PP

               TCP  94 aakskksqksa 104
                       ++++k+++ks+
  Sopen08g028510.1 163 NNPQKRRRKSS 173
                       22222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-2975170IPR005333Transcription factor, TCP
PROSITE profilePS5136925.58476130IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MSSFHDPDDD CGTSELSNGA AGDLNDRKMD GHAVADDKKL VFSAMKEEPF DSDHHTLVPS  60
MPMPVATAAP PRRSSTKDRH TKVEGRGRRI RIPATCAARI FQLTRELGHK SDGETVRWLL  120
EHAEQSIIEA TGTGTVPAIA VSVNGTLKIP TSSPASNPEI DENNPQKRRR KSSNSEFIDV  180
GSLNRNAANV SQFAPVTTTP ATITTAPPPG LVPIWGMSNG GTMVPSNAIW MIPATVPPAQ  240
VNVTNNNNNN NNVVLQYPQL WTPVFNLATR PIPSFVTAPT VAATNNTNGP PAIMIAGPLS  300
MNNGAATTTG PKIGSNKSSM APASLSSSTD KNNDKNVVKP HMLRDFSLEI YDRKELQLMS  360
RSGNHKQETQ VTSSERS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083651.10.0transcription factor TCP19-like
TrEMBLA0A3Q7HTQ80.0A0A3Q7HTQ8_SOLLC; Uncharacterized protein
STRINGSolyc08g080150.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137311112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.28e-56TCP family protein