PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g016230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 158aa    MW: 17289.2 Da    PI: 10.4138
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g016230.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.21e-1484144161
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                       +ke kr +r+ +NR++A+  R+RKka++  Le +vkeLe++N +L ++l++l++e + l+ 
  Sopen08g016230.1  84 DKENKRLKRLLRNRVSAQQARERKKAYLIDLEARVKELETKNAELEERLSTLQNENQMLRH 144
                       5899****************************************************98865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-1484148IPR004827Basic-leucine zipper domain
PfamPF001706.8E-1485145IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.46186149IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.13E-1388146No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-1688148No hitNo description
CDDcd147046.73E-1689140No hitNo description
PROSITE patternPS00036091106IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MQEQATSSIA ASSLPSSSER SSSSALHLEL KEGMESDDEI RRVPEMGGEA TGTTSASGRD  60
GASAAGQAQP SAGTQRKRGR SPADKENKRL KRLLRNRVSA QQARERKKAY LIDLEARVKE  120
LETKNAELEE RLSTLQNENQ MLRHILKNTT AGAQEGRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A4e-16109148342Transcription factor HY5
2oqq_B4e-16109148342Transcription factor HY5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0119140.0AJ011914.1 Solanum lycopersicum mRNA for THY5 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083521.11e-108PREDICTED: transcription factor HY5 isoform X1
RefseqXP_015083522.11e-108PREDICTED: transcription factor HY5 isoform X2
SwissprotQ9SM501e-109HY5_SOLLC; Transcription factor HY5
TrEMBLA0A0V0HHN31e-108A0A0V0HHN3_SOLCH; Putative transcription factor HY5-like
STRINGSolyc08g061130.2.11e-106(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80372430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.12e-40bZIP family protein