PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g015840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 330aa    MW: 36558 Da    PI: 7.2145
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g015840.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.81.1e-39421842134
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                        g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk +eWLl++a p+i el+ +++ + +   ++e++ss+++++s++     
  Sopen08g015840.1  42 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKVVEWLLKAAAPSIAELPPLEALQDTLQlSDEKRSSEQGFDSADiemdd 134
                       689*************************************************************55555222455555555555555577888 PP

               TCP  89 ...kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134
                           +++++++ ++s++s+ s l+l++ +sr kar+rarer +ek ++ +
  Sopen08g015840.1 135 dlnYNNQQQPSCSNSETSKGSGLSLSRsDSRVKARERARERATEKVANHH 184
                       88766677778888888888899*9999****************998864 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-3943181IPR005333Transcription factor, TCP
PROSITE profilePS5136930.95844102IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.952162179IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSNKEDEQYD VGEVKKSGDL GGGIGKLYGW PTSRIVRVSR ASGGKDRHSK VLTSKGLRDR  60
RVRLSVNTAI QFYDLQDRLG CDQPSKVVEW LLKAAAPSIA ELPPLEALQD TLQLSDEKRS  120
SEQGFDSADI EMDDDLNYNN QQQPSCSNSE TSKGSGLSLS RSDSRVKARE RARERATEKV  180
ANHHRNMHPN SSFTELLTGG MSDNKNNKTS VNDDQNTPRQ WSTNPLEYFT DGQIYLGNPL  240
RPVSSPIFSI TGEMQHFPFG GDLVPVVTSS NNEYNLNFSI SSSSSSGFNR GTLQSNSSST  300
LPHYQRYGSY LGSTTGYDNQ HSDQKGKEKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2049103155Putative transcription factor PCF6
5zkt_B5e-2049103155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00063PBMTransfer from AT4G18390Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083360.10.0transcription factor TCP2
RefseqXP_015083361.10.0transcription factor TCP2
RefseqXP_027775178.10.0transcription factor TCP2
SwissprotQ93V431e-58TCP2_ARATH; Transcription factor TCP2
TrEMBLM1BRH90.0M1BRH9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000512530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-44TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]