PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g010620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 395aa    MW: 43977.2 Da    PI: 6.4316
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g010620.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.21.7e-39622052135
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                        g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk++eWLl++a p+i el+ +++ + +   ++e++ss+++++s++     
  Sopen08g010620.1  62 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKAVEWLLKAAAPSIAELPPLEAFPDTLQlSDEKKSSEQGFDSADvemdd 154
                       689*************************************************************55555222355555555555555577788 PP

               TCP  89 ...kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                           +++++++ ++s++s+ s l+l++ +sr kar+ra+er +ek + k++
  Sopen08g010620.1 155 dlnYNQQQQPCCSNSETSKGSGLSLSRsDSRLKARERAKERATEKEKEKEN 205
                       8877788888999999999999*****9************99999988865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3963202IPR005333Transcription factor, TCP
PROSITE profilePS5136931.16764122IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.142182201IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEMEEIRTDE CKFPRMSNKE DEQYQQYDVD DVGEVKKSSG LGGIVKFYGR PSSRIVRVSR  60
ASGGKDRHSK VLTSKGLRDR RVRLSVNTAI QFYDLQDRLG CDQPSKAVEW LLKAAAPSIA  120
ELPPLEAFPD TLQLSDEKKS SEQGFDSADV EMDDDLNYNQ QQQPCCSNSE TSKGSGLSLS  180
RSDSRLKARE RAKERATEKE KEKENKSCIV GQHHQNMHPR SSFTELLTGG MSDNNTSPNG  240
GSIHQNTARQ WSTNPLEYFT SGLLGPSATR GIDNQIYLGN PLQPLRPMFS ITGEHRAELQ  300
NFPFGGDNLV PGVTSSNTST NYNEYNLNFS ISSSSSSGFN RGTLQSNSSS TLPHYQRFSP  360
TDGSYLDSTT EYDARLHLFY GNGYEHSDQK GKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2169123155Putative transcription factor PCF6
5zkt_B8e-2169123155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085227.10.0transcription factor TCP2 isoform X2
TrEMBLG3BGW30.0G3BGW3_SOLLC; TCP transcription factor 24
STRINGSolyc08g048390.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.25e-46TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2